TCONS_00044759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044759
Unique NameTCONS_00044759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044759 ID=TCONS_00044759|Name=TCONS_00044759|organism=Clytia hemisphaerica|type=transcript|length=1528bp
TCCAGGTCTGTTCTTTGGTAATGTTACGGTGTCAAAGCATTCTTCACATG
GAAAACATCTTTAGTAAAGACATCATCTCCAATTTACTTCGGTATACGAT
GACAAGCCGTGAGAAGTGGGTTTGTTATGCTATCAATGTATTACTCAAAA
GCGTGATCATACAAAAGGACTCGGTCCTACACCAAATCGGTGTTTACAAA
ACGCTTCAATCActcatgaaaaagaaaaaagagaccACGGATTTGAAAGA
CGTGCAAGGTCAGCAGAATCAAAGCCCTGCTTCTAAGTTGGAGCAACTTA
AGGCGCTGAAAGAGAAAACGATTCATAAGAATTTCTTTGAAGTTACGGAA
GGGAAATACACGGGAGCATTAGCCAGCGACAAGTTTCATGAGATGACTTC
CAATTCCGATAAAGACGAATTAGGTACTGGCTACGCAGAATGTGACGTCA
TCCATCCAGTTTTGAATGATTTCAGTAAGATTTTGAACTCAAATATCAGT
GGGTTGGAGAAGACAATATGGACCAATCAAAGTATGGACATTCAACAGGG
GGCAGGTCAGAAACTTTGGATTCCGTCTTGTAAGACATTCGCCGACGAAG
TTGAATCAATGAAGGATCGATCGGTTGATTATCTGGTTCATAATCTCTGT
GAATGTTTGGAGGAGAATCACCATTCGCCGACCACCGTCCAATGTTTAGA
GGTCGTTCTGTTCGTTGTCAACACAACGTTGCTTGAAAACACACCGAAAG
CTGCCGATCAAAATACAATGCTGAGGTTCTGTGAACAGGTTGTCAAGCTA
GTCGTTAATTTGGGAGATACCACAAATCCATGTTTAAAGTCCGCTATCGA
CAGGATTGTCAATGCGATTTTAGCCGAACCTGTTTATGCTTCTCACTTCT
CCTTAAAATTAATCGAGTTGACGTCTAGTGGTCATACCTCAAAGCTGCCG
AAATCACCTGTGTGTTTGACCAATGTAAATATGTTATCCATCGCAAAGCT
AGCGTCTCTTTCTCAGCCGACTGTTGCGGAACGAGTTCTTTTGAAGCAGT
TGATGGTCCAAGTTGATCTACAAGACATTGACACATTGAAAGCGTTGGAG
ACATACAAATCAATCACCCTGAACGGCTCGTTCATCATTTGGTCACATGA
TACTCAAGAACAACAACTCACCACCAAGTTGGCCGTCAATCTGTCCAAAT
ATCTCGAGAAATTCATCAGCCAGTCTGCAACATTACTACACGCGGCCAGT
TTCGAACGTGGTGATACCAAGCGGACAGTTTTTCTGTTACAAGACGGAGA
GTATCGGTTGACAGGCAAAGCACACGTGGTTTTGGAAGACGTTCAATTAT
GTTTGGTGCTGACAAACCTACTATATCAGATCCTCACATCCAAAGTTCTC
GATGATTCCCCAGACTCACAGTAAGCCATCGTTTtctttaaggccggtct
ccacttgcgcgctgcgatcgcaccttttggtttcaatcctttttgcttgg
aaaaaagattacgtcataaaaatgtagc
Run BLAST on NCBI

protein sequence of TCONS_00044759-protein

>TCONS_00044759-protein ID=TCONS_00044759-protein|Name=TCONS_00044759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
QVCSLVMLRCQSILHMENIFSKDIISNLLRYTMTSREKWVCYAINVLLKS
VIIQKDSVLHQIGVYKTLQSLMKKKKETTDLKDVQGQQNQSPASKLEQLK
ALKEKTIHKNFFEVTEGKYTGALASDKFHEMTSNSDKDELGTGYAECDVI
HPVLNDFSKILNSNISGLEKTIWTNQSMDIQQGAGQKLWIPSCKTFADEV
ESMKDRSVDYLVHNLCECLEENHHSPTTVQCLEVVLFVVNTTLLENTPKA
ADQNTMLRFCEQVVKLVVNLGDTTNPCLKSAIDRIVNAILAEPVYASHFS
LKLIELTSSGHTSKLPKSPVCLTNVNMLSIAKLASLSQPTVAERVLLKQL
MVQVDLQDIDTLKALETYKSITLNGSFIIWSHDTQEQQLTTKLAVNLSKY
LEKFISQSATLLHAASFERGDTKRTVFLLQDGEYRLTGKAHVVLEDVQLC
LVLTNLLYQILTSKVLDDSPDSQ
Run BLAST on NCBI

transcript from alignment at sc0006160:112..2298+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044759 ID=TCONS_00044759|Name=TCONS_00044759|organism=Clytia hemisphaerica|type=transcript|length=2187bp|location=Sequence derived from alignment at sc0006160:112..2298+ (Clytia hemisphaerica)
TCCAGGTCTGTTCTTTGGTAATGTTACGGTGTCAAAGCATTCTTCACATG
GAAAACATCTTTAGTAAAGACATCATCTCCAATTTACTTCGGTATACGAT
GACAAGCCGTGAGAAGTGGGTTTGTTATGCTATCAATGTATTACTCAAAA
GCGTGATCATACAAAAGGACTCGGTCCTACACCAAATCGGTGTTTACAAA
ACGCTTCAATCActcatgaaaaagaaaaaagagaccACGGATTTGAAAGA
CGTGCAAGGTCAGCAGAATCAAAGCCCTGCTTCTAAGTTGGAGCAACTTA
AGGCGCTGAAAGAGAAAACGATTCATAAGAATTTCTTTGAAGTTACGGAA
GGGAAATACACGGGAGCATTAGCCAGCGACAAGTTTCATGAGATGACTTC
CAATTCCGATAAAGACGAATTAGGTACTGGCTACGCAGAATGTGACGTCA
TCCATCCAGTTTTGAATGATTTCAGTAAGATTTTGAACTCAAATATCAGT
GGGTTGGAGAAGACAATATGGACCAATCAAAGTATGGACATTCAACAGGG
GGCAGGTCAGAAACTTTGGATTCCGTCTTGTAAGACATTCGCCGACGAAG
TTGAATCAATGAAGGATCGATCGGTTGATTATCTGGTTCATAATCTCTGT
GAATGTTTGGAGGAGAATCACCATTCGCCGACCACCGTCCAATGTTTAGA
GGTCGTTCTGTTCGTTGTCAACACAACGTTGCTTGAAAACACACCGAAAG
CTGCCGATCAAAATACAATGCTGAGGTTCTGTGAACAGGTTGTCAAGCTA
GTCGTTAATTTGGGAGATACCACAAATCCATGTTTAAAGTCCGCTATCGA
CAGGATTGTCAATGCGATTTTAGCCGAACCTGTTTATGCTTCTCACTTCT
CCTTAAAATTAATCGAGTTGACGTCTAGTGGTCATACCTCAAAGCTGCCG
AAATCACCTGTGTGTTTGACCAATGTAAATATGTTATCCATCGCAAAGCT
AGCGTCTCTTTCTCAGCCGACTGTTGCGGAACGAGTTCTTTTGAAGCAGT
TGATGGTCCAAGTTGATCTACAAGAGTAAGTAAACAAACGCGCATTCCAA
GTAGGTAACAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaa
gtgaatatcagaAGAAATACTGTTACTATTacttttcgaaaacccgcgac
gcttctgattggtcaagcgctgaaattctattgtaatgtcacatgACTTA
GGTAggacttttcagcaaaagtacgccatctagctattcgggctttataa
atccaTGGTAGGTAATAGTGCATTAATTTCTTTCATGTATAGCCAAAAGA
CAATGTCGTTTGTTTATTTTATCTGACCGAACGTACGATTAAGTAGCAGA
AAGTTTTCTCTTTACTTTATCTGATAAAATCTTTACATGCGTTTAGACGT
GCTGTTAGATTTTCTCTGAATGTTTCGGCTACTTTTAAGAGACTCGTGGA
TTTTCTGCCTAGTTTtttatttctagtttttttacttttctagtAGTACT
TTGGACTTTTGCCATATTGAAAAACCTCGGTGTTTTCTATAAAGAAAAAC
TCTTTCCCGTTAGGATTTGCTGAGGGTGCACCCCCGTGTGCCAAGAACGG
AAACTCGACCTCCTCTTATTTGCTTTTCTAAAGATAGAGCAGTTAAAGGA
ACTACTTTTTCTACGTCCTCTTCTTTCATCATAGCATTGACACATTGAAA
GCGTTGGAGACATACAAATCAATCACCCTGAACGGCTCGTTCATCATTTG
GTCACATGATACTCAAGAACAACAACTCACCACCAAGTTGGCCGTCAATC
TGTCCAAATATCTCGAGAAATTCATCAGCCAGTCTGCAACATTACTACAC
GCGGCCAGTTTCGAACGTGGTGATACCAAGCGGACAGTTTTTCTGTTACA
AGACGGAGAGTATCGGTTGACAGGCAAAGCACACGTGGTTTTGGAAGACG
TTCAATTATGTTTGGTGCTGACAAACCTACTATATCAGATCCTCACATCC
AAAGTTCTCGATGATTCCCCAGACTCACAGTAAGCCATCGTTTtctttaa
ggccggtctccacttgcgcgctgcgatcgcaccttttggtttcaatcctt
tttgcttggaaaaaagattacgtcataaaaatgtagc

Coding sequence (CDS) from alignment at sc0006160:112..2298+

>TCONS_00044759 ID=TCONS_00044759|Name=TCONS_00044759|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0006160:112..2298+ (Clytia hemisphaerica)
CAGGTCTGTTCTTTGGTAATGTTACGGTGTCAAAGCATTCTTCACATGGA
AAACATCTTTAGTAAAGACATCATCTCCAATTTACTTCGGTATACGATGA
CAAGCCGTGAGAAGTGGGTTTGTTATGCTATCAATGTATTACTCAAAAGC
GTGATCATACAAAAGGACTCGGTCCTACACCAAATCGGTGTTTACAAAAC
GCTTCAATCActcatgaaaaagaaaaaagagaccACGGATTTGAAAGACG
TGCAAGGTCAGCAGAATCAAAGCCCTGCTTCTAAGTTGGAGCAACTTAAG
GCGCTGAAAGAGAAAACGATTCATAAGAATTTCTTTGAAGTTACGGAAGG
GAAATACACGGGAGCATTAGCCAGCGACAAGTTTCATGAGATGACTTCCA
ATTCCGATAAAGACGAATTAGGTACTGGCTACGCAGAATGTGACGTCATC
CATCCAGTTTTGAATGATTTCAGTAAGATTTTGAACTCAAATATCAGTGG
GTTGGAGAAGACAATATGGACCAATCAAAGTATGGACATTCAACAGGGGG
CAGGTCAGAAACTTTGGATTCCGTCTTGTAAGACATTCGCCGACGAAGTT
GAATCAATGAAGGATCGATCGGTTGATTATCTGGTTCATAATCTCTGTGA
ATGTTTGGAGGAGAATCACCATTCGCCGACCACCGTCCAATGTTTAGAGG
TCGTTCTGTTCGTTGTCAACACAACGTTGCTTGAAAACACACCGAAAGCT
GCCGATCAAAATACAATGCTGAGGTTCTGTGAACAGGTTGTCAAGCTAGT
CGTTAATTTGGGAGATACCACAAATCCATGTTTAAAGTCCGCTATCGACA
GGATTGTCAATGCGATTTTAGCCGAACCTGTTTATGCTTCTCACTTCTCC
TTAAAATTAATCGAGTTGACGTCTAGTGGTCATACCTCAAAGCTGCCGAA
ATCACCTGTGTGTTTGACCAATGTAAATATGTTATCCATCGCAAAGCTAG
CGTCTCTTTCTCAGCCGACTGTTGCGGAACGAGTTCTTTTGAAGCAGTTG
ATGGTCCAAGTTGATCTACAAGACATTGACACATTGAAAGCGTTGGAGAC
ATACAAATCAATCACCCTGAACGGCTCGTTCATCATTTGGTCACATGATA
CTCAAGAACAACAACTCACCACCAAGTTGGCCGTCAATCTGTCCAAATAT
CTCGAGAAATTCATCAGCCAGTCTGCAACATTACTACACGCGGCCAGTTT
CGAACGTGGTGATACCAAGCGGACAGTTTTTCTGTTACAAGACGGAGAGT
ATCGGTTGACAGGCAAAGCACACGTGGTTTTGGAAGACGTTCAATTATGT
TTGGTGCTGACAAACCTACTATATCAGATCCTCACATCCAAAGTTCTCGA
TGATTCCCCAGACTCACAGTAACAGGTCTGTTCTTTGGTAATGTTACGGT
GTCAAAGCATTCTTCACATGGAAAACATCTTTAGTAAAGACATCATCTCC
AATTTACTTCGGTATACGATGACAAGCCGTGAGAAGTGGGTTTGTTATGC
TATCAATGTATTACTCAAAAGCGTGATCATACAAAAGGACTCGGTCCTAC
ACCAAATCGGTGTTTACAAAACGCTTCAATCActcatgaaaaagaaaaaa
gagaccACGGATTTGAAAGACGTGCAAGGTCAGCAGAATCAAAGCCCTGC
TTCTAAGTTGGAGCAACTTAAGGCGCTGAAAGAGAAAACGATTCATAAGA
ATTTCTTTGAAGTTACGGAAGGGAAATACACGGGAGCATTAGCCAGCGAC
AAGTTTCATGAGATGACTTCCAATTCCGATAAAGACGAATTAGGTACTGG
CTACGCAGAATGTGACGTCATCCATCCAGTTTTGAATGATTTCAGTAAGA
TTTTGAACTCAAATATCAGTGGGTTGGAGAAGACAATATGGACCAATCAA
AGTATGGACATTCAACAGGGGGCAGGTCAGAAACTTTGGATTCCGTCTTG
TAAGACATTCGCCGACGAAGTTGAATCAATGAAGGATCGATCGGTTGATT
ATCTGGTTCATAATCTCTGTGAATGTTTGGAGGAGAATCACCATTCGCCG
ACCACCGTCCAATGTTTAGAGGTCGTTCTGTTCGTTGTCAACACAACGTT
GCTTGAAAACACACCGAAAGCTGCCGATCAAAATACAATGCTGAGGTTCT
GTGAACAGGTTGTCAAGCTAGTCGTTAATTTGGGAGATACCACAAATCCA
TGTTTAAAGTCCGCTATCGACAGGATTGTCAATGCGATTTTAGCCGAACC
TGTTTATGCTTCTCACTTCTCCTTAAAATTAATCGAGTTGACGTCTAGTG
GTCATACCTCAAAGCTGCCGAAATCACCTGTGTGTTTGACCAATGTAAAT
ATGTTATCCATCGCAAAGCTAGCGTCTCTTTCTCAGCCGACTGTTGCGGA
ACGAGTTCTTTTGAAGCAGTTGATGGTCCAAGTTGATCTACAAGACATTG
ACACATTGAAAGCGTTGGAGACATACAAATCAATCACCCTGAACGGCTCG
TTCATCATTTGGTCACATGATACTCAAGAACAACAACTCACCACCAAGTT
GGCCGTCAATCTGTCCAAATATCTCGAGAAATTCATCAGCCAGTCTGCAA
CATTACTACACGCGGCCAGTTTCGAACGTGGTGATACCAAGCGGACAGTT
TTTCTGTTACAAGACGGAGAGTATCGGTTGACAGGCAAAGCACACGTGGT
TTTGGAAGACGTTCAATTATGTTTGGTGCTGACAAACCTACTATATCAGA
TCCTCACATCCAAAGTTCTCGATGATTCCCCAGACTCACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028371XLOC_028371Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044759-proteinTCONS_00044759-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044759-exon-sc0006160-1491911889:112..1186TCONS_00044759-exon-sc0006160-1491911889:112..1186Clytia hemisphaericaexon
TCONS_00044759-exon-sc0006160-1510915933:112..1186TCONS_00044759-exon-sc0006160-1510915933:112..1186Clytia hemisphaericaexon
TCONS_00044759-exon-sc0006160-1575043694:112..1186TCONS_00044759-exon-sc0006160-1575043694:112..1186Clytia hemisphaericaexon
TCONS_00044759-exon-sc0006160-1491911889:1846..2298TCONS_00044759-exon-sc0006160-1491911889:1846..2298Clytia hemisphaericaexon
TCONS_00044759-exon-sc0006160-1510915933:1846..2298TCONS_00044759-exon-sc0006160-1510915933:1846..2298Clytia hemisphaericaexon
TCONS_00044759-exon-sc0006160-1575043694:1846..2298TCONS_00044759-exon-sc0006160-1575043694:1846..2298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006160supercontigsc0006160:112..2298 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06631	3.12566	3.66433	3.29915	14.2959	9.4332	6.98823	9.93889	4.73719	5.67213	8.31308	5.57702	8.24786	9.3445	4.99568	7.77158	5.11447	5.05205	4.75216	4.61115	8.37262	6.28743	4.17035	6.73826	21.5598	22.486	4.39413	2.85924	4.39437	4.87564
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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