TCONS_00044758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044758
Unique NameTCONS_00044758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044758 ID=TCONS_00044758|Name=TCONS_00044758|organism=Clytia hemisphaerica|type=transcript|length=705bp
AGAACAAATCCGTTTCTATAagtatttggtactttgcagACCGGTCTTTA
AAATACACGTTGACCACCTGCTGGAACTCGGGAACTACTGGAGCGTTGAC
GTGAAATCCCCccaagatgctcgaagggttaacTTAAAAGTTCAGCTAAA
CAGTTTCTTTGGCCGACACTGGATTGCTTGTTGATTTAAtttcatttgta
tttttcaggtaCATCTGAGACTGGTGATAAAAGCCGTGCAGCATCTATGA
GAAGTTGCATCGAAGTCGATTGTACCGAAAACATACGAGCATTTCTTGAA
CATATTGGTTTTCAATTCGATCATGAGACTATACTACGCGGTTACTTATT
CAAAAAAGGTCGCATGAAAATTTGCGTTTCAAGGCTACACAAGATTCCGG
AGAAAGGTGTTTTTCAAAATGCTATGCAAATGACTGATTCTTATTTAGTT
GAAGTGACTTTGAATACTTTAGTTCAACAAGACTCTTTATGTGAAGACAT
GAAGGCTTTCGCTGAATACCTGAAACCCATTGTTGTTCTGGATAAACTTG
ATCAGAAACGTCTATAAACTGGTAtcgggctcttccagaaaaaaattgca
cATGGGGGGGtagaggatataacaatttttagtgatttaccccccgaacA
GGGTGgcttttggccccccggacaataggttttacctcccggacaagcat
ctgct
Run BLAST on NCBI

protein sequence of TCONS_00044758-protein

>TCONS_00044758-protein ID=TCONS_00044758-protein|Name=TCONS_00044758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MRSCIEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKI
PEKGVFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDK
LDQKRL
Run BLAST on NCBI

transcript from alignment at sc0006159:3..707

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044758 ID=TCONS_00044758|Name=TCONS_00044758|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at sc0006159:3..707 (Clytia hemisphaerica)
agcagatgcttgtccgggaggtaaaacctattgtccggggggccaaaagc
CACCCTgttcggggggtaaatcactaaaaattgttatatcctctaCCCCC
CCATgtgcaatttttttctggaagagcccgaTACCAGTTTATAGACGTTT
CTGATCAAGTTTATCCAGAACAACAATGGGTTTCAGGTATTCAGCGAAAG
CCTTCATGTCTTCACATAAAGAGTCTTGTTGAACTAAAGTATTCAAAGTC
ACTTCAACTAAATAAGAATCAGTCATTTGCATAGCATTTTGAAAAACACC
TTTCTCCGGAATCTTGTGTAGCCTTGAAACGCAAATTTTCATGCGACCTT
TTTTGAATAAGTAACCGCGTAGTATAGTCTCATGATCGAATTGAAAACCA
ATATGTTCAAGAAATGCTCGTATGTTTTCGGTACAATCGACTTCGATGCA
ACTTCTCATAGATGCTGCACGGCTTTTATCACCAGTCTCAGATGtacctg
aaaaatacaaatgaaaTTAAATCAACAAGCAATCCAGTGTCGGCCAAAGA
AACTGTTTAGCTGAACTTTTAAgttaacccttcgagcatcttggGGGGAT
TTCACGTCAACGCTCCAGTAGTTCCCGAGTTCCAGCAGGTGGTCAACGTG
TATTTTAAAGACCGGTctgcaaagtaccaaatactTATAGAAACGGATTT
GTTCT

Coding sequence (CDS) from alignment at sc0006159:3..707

>TCONS_00044758 ID=TCONS_00044758|Name=TCONS_00044758|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0006159:3..707 (Clytia hemisphaerica)
TTATAGACGTTTCTGATCAAGTTTATCCAGAACAACAATGGGTTTCAGGT
ATTCAGCGAAAGCCTTCATGTCTTCACATAAAGAGTCTTGTTGAACTAAA
GTATTCAAAGTCACTTCAACTAAATAAGAATCAGTCATTTGCATAGCATT
TTGAAAAACACCTTTCTCCGGAATCTTGTGTAGCCTTGAAACGCAAATTT
TCATGCGACCTTTTTTGAATAAGTAACCGCGTAGTATAGTCTCATGATCG
AATTGAAAACCAATATGTTCAAGAAATGCTCGTATGTTTTCGGTACAATC
GACTTCGATGCAACTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028370XLOC_028370Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044758-proteinTCONS_00044758-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044758-exon-sc0006159-1491911889:3..707TCONS_00044758-exon-sc0006159-1491911889:3..707Clytia hemisphaericaexon
TCONS_00044758-exon-sc0006159-1510915933:3..707TCONS_00044758-exon-sc0006159-1510915933:3..707Clytia hemisphaericaexon
TCONS_00044758-exon-sc0006159-1575043694:3..707TCONS_00044758-exon-sc0006159-1575043694:3..707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006159supercontigsc0006159:3..707 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8126	10.6798	4.69174	4.26633	7.93938	7.09123	11.9816	12.425	11.8994	9.65712	20.7979	11.6947	19.1053	22.0301	12.8311	13.395	9.39896	13.6208	11.0979	9.29299	13.726	13.6863	20.8633	21.7828	27.9823	31.5203	6.83207	9.34704	8.37705	11.2443
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019095Mediator_Med18_met/fun
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
[Close]
BLAST of TCONS_00044758 vs. Swiss-Prot (Human)
Match: MED18 (Mediator of RNA polymerase II transcription subunit 18 OS=Homo sapiens GN=MED18 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.841e-30
Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:  190 FHLYFSGTSETGDKSRAASMRSCIEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKIPEKGVFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDKLDQKRL 564
            +HL + G  E GDK+R A +R+C+++  +EN+  FL  +GF+ DHE + +G+LF+KG MKI V ++ +I   G   +   ++ SYLVE+++     QD + +DMK FAE LKP+V L+K+D KRL
Sbjct:   83 WHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207
The following BLAST results are available for this feature:
BLAST of TCONS_00044758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED188.841e-3043.20Mediator of RNA polymerase II transcription subuni... [more]
back to top