TCONS_00044748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044748
Unique NameTCONS_00044748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044748 ID=TCONS_00044748|Name=TCONS_00044748|organism=Clytia hemisphaerica|type=transcript|length=331bp
TCAGGACAACCCAGATCTGTTTGCAATGACCGAAAAGACGAGAATGTACA
TTTTCAGAAATCTTGAACCAGAGGAGCCCATCGTATGTTCAGGATATATT
TGTCAATTCAATGATCTTCAAATTCAATCAATCCTACTTGATGAAATTAT
GAAGGACCCTGAAAATCCAACCAAAGAATCAATCATCGACATTGAAACGA
AGTCATTGCGAGATACTCGAGATCTGTTGGACAAAGTAGGAATCGATGAT
ACATACCAGTTTGTTATGGATAATCCACATCCAAGGTTATGGAGATTATT
AGCAGAGTCTGCACTCGAGAAATTGGATTTG
Run BLAST on NCBI

protein sequence of TCONS_00044748-protein

>TCONS_00044748-protein ID=TCONS_00044748-protein|Name=TCONS_00044748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
QDNPDLFAMTEKTRMYIFRNLEPEEPIVCSGYICQFNDLQIQSILLDEIM
KDPENPTKESIIDIETKSLRDTRDLLDKVGIDDTYQFVMDNPHPRLWRLL
AESALEKLDL
Run BLAST on NCBI

transcript from alignment at sc0006133:1..1214-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044748 ID=TCONS_00044748|Name=TCONS_00044748|organism=Clytia hemisphaerica|type=transcript|length=1214bp|location=Sequence derived from alignment at sc0006133:1..1214- (Clytia hemisphaerica)
TCAGGACAACCCAGATCTGTTTGCAATGACCGAAAAGACGAGAATGTACA
TTTTCAGAAATCTTGAACCAGAGGTATAATTCGATTCGCATTTCATCGAT
TCCAAGCGATGATATCTTGGCGATTAACGACTGATATAATGTAGATTTTT
TGAGAAAACCCCACCCTGAGTAGTCAATAATTGTCAATTATTTTTGCCAA
AAGTTTTTTGACCAACGTTTTTTTTTGGAACTTTTGTAGGAGCCCATCGT
ATGTTCAGGATATATTTGTCAATTCAATGATCTTCAAATTCAATCAATCC
TACTTGATGAAATTATGAAGGTAAGTCAAGTTATGCTCTTTGTTCTTTCG
ACTATTTTGACTATTTCTTTCTCAGTTAATTTCGAAGAATGCAACTAAAC
TCAACAAATTTCGATTAAACTTGATGTGTAGAATTTCTTTCCATCTGGTA
TATACAGTAATACAATTTCTCTCTAACTCCAATATCGGTCAAAATATATT
GCAAATTTTGGTAAAATTCCTCGTTTTTAGCATTTTAAAGTTTGGGCGAT
TTAATCGATTATTTTCAATTTTGGTGGGGTTTATAGACTTCCAGGTCATA
TTCTGAGCCCTATTGGACCGTTCTTGAATTTTTGGATTTTAGAAAAATCT
CATGTTAAAACTCAGAGTTAAAACTCTACCCTTTCAACCTAAGTTAGAGT
GCTTCCAAATCGATTGTGGCTAAAAGATTTCGTGGGAATTTCCCTTTTTT
CTCAAATATTATGGCCGGTATTGTCGCTCCAGCATTTTTTCAACGTTCAT
GACCGACCTAGTGGATATGACATTGATGCCTTATATCAGTTATAATTTCA
TTATCATTTTTTTAAGGACCCTGAAAATCCAACCAAAGAATCAATCATCG
ACATTGAAACGAAGTCATTGCGAGATACTCGAGATCTGTTGGACAAAGTA
GGAATCGATGATACATACCAGTTTGTTATGGATAATCCACATCCAAGGTT
ATGGTAAGTTAAAGGAAAAAAGACGCATTCTTTATAAGTCTTTATAAGTG
TGTCCCAAAAAAGCCGACAAATTTTTATATTAAGTATTTTAATCAGGACT
TTCCTTGTTTAAGCCTTTAAGTGCCAATGTCGAGTATATATTTTAAAACT
TAACTTTTATTTTCATATCAACAGGAGATTATTAGCAGAGTCTGCACTCG
AGAAATTGGATTTG

Coding sequence (CDS) from alignment at sc0006133:1..1214-

>TCONS_00044748 ID=TCONS_00044748|Name=TCONS_00044748|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at sc0006133:1..1214- (Clytia hemisphaerica)
GAGATTATTAGCAGAGTCTGCACTCGAGAAATTGGATTTGGACCCTGAAA
ATCCAACCAAAGAATCAATCATCGACATTGAAACGAAGTCATTGCGAGAT
ACTCGAGATCTGTTGGACAAAGTAGGAATCGATGATACATACCAGTTTGT
TATGGATAATCCACATCCAAGGTTATGGAGCCCATCGTATGTTCAGGATA
TATTTGTCAATTCAATGATCTTCAAATTCAATCAATCCTACTTGATGAAA
TTATGAAGCAGGACAACCCAGATCTGTTTGCAATGACCGAAAAGACGAGA
ATGTACATTTTCAGAAATCTTGAACCAGAGGAGATTATTAGCAGAGTCTG
CACTCGAGAAATTGGATTTGGACCCTGAAAATCCAACCAAAGAATCAATC
ATCGACATTGAAACGAAGTCATTGCGAGATACTCGAGATCTGTTGGACAA
AGTAGGAATCGATGATACATACCAGTTTGTTATGGATAATCCACATCCAA
GGTTATGGAGCCCATCGTATGTTCAGGATATATTTGTCAATTCAATGATC
TTCAAATTCAATCAATCCTACTTGATGAAATTATGAAGCAGGACAACCCA
GATCTGTTTGCAATGACCGAAAAGACGAGAATGTACATTTTCAGAAATCT
TGAACCAGAGGAGATTATTAGCAGAGTCTGCACTCGAGAAATTGGATTTG
GACCCTGAAAATCCAACCAAAGAATCAATCATCGACATTGAAACGAAGTC
ATTGCGAGATACTCGAGATCTGTTGGACAAAGTAGGAATCGATGATACAT
ACCAGTTTGTTATGGATAATCCACATCCAAGGTTATGGAGCCCATCGTAT
GTTCAGGATATATTTGTCAATTCAATGATCTTCAAATTCAATCAATCCTA
CTTGATGAAATTATGAAGCAGGACAACCCAGATCTGTTTGCAATGACCGA
AAAGACGAGAATGTACATTTTCAGAAATCTTGAACCAGAGGAGATTATTA
GCAGAGTCTGCACTCGAGAAATTGGATTTGGACCCTGAAAATCCAACCAA
AGAATCAATCATCGACATTGAAACGAAGTCATTGCGAGATACTCGAGATC
TGTTGGACAAAGTAGGAATCGATGATACATACCAGTTTGTTATGGATAAT
CCACATCCAAGGTTATGGAGCCCATCGTATGTTCAGGATATATTTGTCAA
TTCAATGATCTTCAAATTCAATCAATCCTACTTGATGAAATTATGAAGCA
GGACAACCCAGATCTGTTTGCAATGACCGAAAAGACGAGAATGTACATTT
TCAGAAATCTTGAACCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028360XLOC_028360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044748-exon-sc0006133-1575043694:1142..1214TCONS_00044748-exon-sc0006133-1575043694:1142..1214Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1575043694:895..975TCONS_00044748-exon-sc0006133-1575043694:895..975Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1575043694:212..348TCONS_00044748-exon-sc0006133-1575043694:212..348Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1575043694:1..40TCONS_00044748-exon-sc0006133-1575043694:1..40Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1510915933:1142..1214TCONS_00044748-exon-sc0006133-1510915933:1142..1214Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1510915933:895..975TCONS_00044748-exon-sc0006133-1510915933:895..975Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1510915933:212..348TCONS_00044748-exon-sc0006133-1510915933:212..348Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1510915933:1..40TCONS_00044748-exon-sc0006133-1510915933:1..40Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1491911889:1142..1214TCONS_00044748-exon-sc0006133-1491911889:1142..1214Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1491911889:895..975TCONS_00044748-exon-sc0006133-1491911889:895..975Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1491911889:212..348TCONS_00044748-exon-sc0006133-1491911889:212..348Clytia hemisphaericaexon
TCONS_00044748-exon-sc0006133-1491911889:1..40TCONS_00044748-exon-sc0006133-1491911889:1..40Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044748-proteinTCONS_00044748-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006133supercontigsc0006133:1..1214 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.1552	6.62128	16.5537	8.0926	1.77331	12.2151	6.57655	11.5071	15.0153	15.8512	7.04217	17.4084	7.08192	7.83976	3.67955	4.47251	0.908563	4.12423	4.85502	3.44265	5.16603	6.54765	8.06071	7.91128	4.52358	10.7644	8.45564	3.8384	2.77805	5.62509
Blast
[Close]
BLAST of TCONS_00044748 vs. Swiss-Prot (Human)
Match: WDR35 (WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.039e-52
Identity = 78/110 (70.91%), Postives = 96/110 (87.27%), Query Frame = 2 
Query:    2 QDNPDLFAMTEKTRMYIFRNLEPEEPIVCSGYICQFNDLQIQSILLDEIMKDPENPTKESIIDIETKSLRDTRDLLDKVGIDDTYQFVMDNPHPRLWRLLAESALEKLDL 331
            +DNPDLFAM EKTRMY+FRNL+PEEPI  SGYIC F DL+I+S+LLDEI+KDPE+P K+ +I+ E +SLRD+R L++KVGI D  QF+ DNPHPRLWRLLAE+AL+KLDL
Sbjct:  603 KDNPDLFAMMEKTRMYVFRNLDPEEPIQTSGYICNFEDLEIKSVLLDEILKDPEHPNKDYLINFEIRSLRDSRALIEKVGIKDASQFIEDNPHPRLWRLLAEAALQKLDL 712
The following BLAST results are available for this feature:
BLAST of TCONS_00044748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR351.039e-5270.91WD repeat-containing protein 35 OS=Homo sapiens GN... [more]
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