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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044740 ID=TCONS_00044740|Name=TCONS_00044740|organism=Clytia hemisphaerica|type=transcript|length=406bp
NTTAAAGGGCGTCAACTGttttaatctttgttttttccactttttcagAT
AATGAACCAAACATTACAAGCAGAGAATTTGGACAGTTCAATGATTACAT
CACCGTCAGCCAATCAAATGAGTGTAACGGCTTTGGAAACACAAAATGCT
CTATTACAAATCAGATCAAGGGTGTTGACTTTCTGTAAAAACGTCATTTC
AAGCCAAGGGTTGAGTGGACCATACGCACGTGTTATGTTTGCGCCATCTT
TCACCGATAACGTTGGACAAGAAACACGACTCATCACCGGCAAACCAGTA
TCGAAGAAACAACTACCAAACTTATCATTGATCGTGGGTGATTTGAAGTC
GTGCCCGTCTCAGTTATCGAAATGTTTGGACCATTTAAAGGTCCTCGACC
GAAAGA Run BLAST on NCBI protein sequence of TCONS_00044740-protein >TCONS_00044740-protein ID=TCONS_00044740-protein|Name=TCONS_00044740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MNQTLQAENLDSSMITSPSANQMSVTALETQNALLQIRSRVLTFCKNVIS
SQGLSGPYARVMFAPSFTDNVGQETRLITGKPVSKKQLPNLSLIVGDLKS
CPSQLSKCLDHLKVLDRK Run BLAST on NCBI transcript from alignment at sc0006118:1513..2545+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044740 ID=TCONS_00044740|Name=TCONS_00044740|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at sc0006118:1513..2545+ (Clytia hemisphaerica)
NTTAAAGGGCGTCAACTGttttaatctttgttttttccactttttcagAT
AATGAACCAAACATTACAAGCAGAGAATTTGGACAGTTCAATGATTACAT
CACCGTCAGCCAATCAAATGAGTGTAACGGCTTTGGAAACACAAAATGCT
CTATTACAAATCAGATCAAGGGTGTTGACTTTCTGTAAAAACGTCATTTC
AAGCCAAGGTATGATTTTGCTAGGGATCAAACCCGCAACCTCTCAAAGTa
taagcgagtttatgtatttttgcAATTACGAAGacggagtgactgaagcg
attaagaataacccgcagttttgacccacAATATCGAGGAAGGTAAAAGC
TAGGGTTAGGCTCAGCCattcaggatctagacaaatcaagAGCTAACCGT
TTCAGtgcgcagaaaaacacacacatAAACCCACCATACTCTGCATTCAT
GATACGgccaccaaaatttcaaaaatattctttgtttgttttgacagGGT
TGAGTGGACCATACGCACGTGTTATGTTTGCGCCATCTTTCACCGATAAC
GTTGGACAAGAAACACGACTCATCACCGGCAAACCAGGTTTGAATCCTGT
TTTGACTTTCTTCTTATTGCATGNACTCATCACCGGCAAACCAGGTTTGA
ATCCTGTTTTGACTTTCTTCTTATTGCATGCTCTAAATTTTTAGCGAAGC
TTTGGAAAACCATAATTTTAGATTGAACTGACACGAGTGCGGTTTATTAT
TTTCTAATTATTGGGTGGGAGGGCgataacaaaagattttcatctCAAGG
GATGACATTCAGACAAAAAGGTTGGATAGTGGACCACTTATTCGGGCGGC
CTTGGCACTGAAGGTTATTACACTTACAACTATAGTTTAACTGGTCAGAT
AAACACAATGTGTAACTTTCTTCAGTATCGAAGAAACAACTACCAAACTT
ATCATTGATCGTGGGTGATTTGAAGTCGTGCCCGTCTCAGTTATCGAAAT
GTTTGGACCATTTAAAGGTCCTCGACCGAAAGA Coding sequence (CDS) from alignment at sc0006118:1513..2545+ >TCONS_00044740 ID=TCONS_00044740|Name=TCONS_00044740|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0006118:1513..2545+ (Clytia hemisphaerica)
ATGAACCAAACATTACAAGCAGAGAATTTGGACAGTTCAATGATTACATC
ACCGTCAGCCAATCAAATGAGTGTAACGGCTTTGGAAACACAAAATGCTC
TATTACAAATCAGATCAAGGGTGTTGACTTTCTGTAAAAACGTCATTTCA
AGCCAAGGGTTGAGTGGACCATACGCACGTGTTATGTTTGCGCCATCTTT
CACCGATAACGTTGGACAAGAAACACGACTCATCACCGGCAAACCAGTAT
CGAAGAAACAACTACCAAACTTATCATTGATCGTGGGTGATTTGAAGTCG
TGCCCGTCTCAGTTATCGAAATGTTTGGACCATTTAAAGGTCCTCGACCG
AAAGATGAACCAAACATTACAAGCAGAGAATTTGGACAGTTCAATGATTA
CATCACCGTCAGCCAATCAAATGAGTGTAACGGCTTTGGAAACACAAAAT
GCTCTATTACAAATCAGATCAAGGGTGTTGACTTTCTGTAAAAACGTCAT
TTCAAGCCAAGGGTTGAGTGGACCATACGCACGTGTTATGTTTGCGCCAT
CTTTCACCGATAACGTTGGACAAGAAACACGACTCATCACCGGCAAACCA
GTATCGAAGAAACAACTACCAAACTTATCATTGATCGTGGGTGATTTGAA
GTCGTGCCCGTCTCAGTTATCGAAATGTTTGGACCATTTAAAGGTCCTCG
ACCGAAAGATGAACCAAACATTACAAGCAGAGAATTTGGACAGTTCAATG
ATTACATCACCGTCAGCCAATCAAATGAGTGTAACGGCTTTGGAAACACA
AAATGCTCTATTACAAATCAGATCAAGGGTGTTGACTTTCTGTAAAAACG
TCATTTCAAGCCAAGGGTTGAGTGGACCATACGCACGTGTTATGTTTGCG
CCATCTTTCACCGATAACGTTGGACAAGAAACACGACTCATCACCGGCAA
ACCAGTATCGAAGAAACAACTACCAAACTTATCATTGATCGTGGGTGATT
TGAAGTCGTGCCCGTCTCAGTTATCGAAATGTTTGGACCATTTAAAGGTC
CTCGACCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044740-exon-sc0006118-1491911889:1513..1720 | TCONS_00044740-exon-sc0006118-1491911889:1513..1720 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1510915933:1513..1720 | TCONS_00044740-exon-sc0006118-1510915933:1513..1720 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1575043694:1513..1720 | TCONS_00044740-exon-sc0006118-1575043694:1513..1720 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1491911889:2010..2099 | TCONS_00044740-exon-sc0006118-1491911889:2010..2099 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1510915933:2010..2099 | TCONS_00044740-exon-sc0006118-1510915933:2010..2099 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1575043694:2010..2099 | TCONS_00044740-exon-sc0006118-1575043694:2010..2099 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1491911889:2438..2545 | TCONS_00044740-exon-sc0006118-1491911889:2438..2545 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1510915933:2438..2545 | TCONS_00044740-exon-sc0006118-1510915933:2438..2545 | Clytia hemisphaerica | exon |
| TCONS_00044740-exon-sc0006118-1575043694:2438..2545 | TCONS_00044740-exon-sc0006118-1575043694:2438..2545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006118 | supercontig | sc0006118:1513..2545 + |
Blast
The following BLAST results are available for this feature:
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