|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044730 ID=TCONS_00044730|Name=TCONS_00044730|organism=Clytia hemisphaerica|type=transcript|length=293bp
ACAGATTGACGGTTTGAATCCGAatcatttcgaaaaaaaaattatttctg
tcAGTGGGAAAGACGTTGAATATGCAGTGTTTGATCTTACTAAGAAAGac
tTGGTTAAGTTCCCTTTTGATGTTcaagtgaagatgaaaaatcgAGCAAC
AGTGACGGATTTGAAATCTTCTTATATTTTGGTCCACAAATACACAACTG
GTTGGTTTACTTTTATAATACATGTTATTCGAATATTCCACCGCTGCTGT
TTTATCAGCCGGAACATTAAAAACCCTGTGGTATCTTCCCGGA Run BLAST on NCBI transcript from alignment at sc0006098:1135..2522+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044730 ID=TCONS_00044730|Name=TCONS_00044730|organism=Clytia hemisphaerica|type=transcript|length=1388bp|location=Sequence derived from alignment at sc0006098:1135..2522+ (Clytia hemisphaerica)
ACAGATTGACGGTTTGAATCCGAatcatttcgaaaaaaaaattatttctg
tcAGTGGGAAAGACGTTGAATATGCAGTGTTTGATCTTACTAAGAAAGGT
AGGTCTATGCAAGCTTTATGATTTTAGCCCGGaatgtttttctcaatttt
actTTCAGCTCTTATGGACGTTCTGATGGTAGCATTTTCTCTAACCCTGA
TTCCACATTGTCAAAGAATTGTAATTCATTGAAAAACAATTTCCTTGTAT
CCGCTTTTGGCCAACGGACGCTATTTGCAGcgaaaaatttgctttttaaa
atcGGTTACTTGCAgctaaaatttgatgaaattcatataatacccttaca
gtgcattttttctcCAGTTTTCAATCCTTGCTCTTTCTTAGATTTACTTA
GATTACATTATGCATTACATtgcatttataaaaaaaagtccACCCTTTCA
ATGTAATTCTGCTATcttgaaaaaaatctataaaaacatCCCTTTAGCCG
TCGCACATAGCCGTCGGCCAATTTGGTAAACTGCATTCCCGGAGTTTTCG
GAGCCTATAAAGGTTTTCGAATTATACTTGAACGAAAAATTTTACCGGAA
GAATTTTTGGAATAATTTTGATTAAAACGTATTTATTATCAAACTAGTTA
GTAGATGAGATTTTAATATAATAACGAAGAAATCCCATAGAATCACATGT
AGATCAGGCTTTCGTTtaaattctttcttttctttttcagactTGGTTAA
GTTCCCTTTTGATGTTcaagtgaagatgaaaaatcgAGCAACAGGTTTTC
GTTCTTCCcatttatcatttttgtttcattAGAAGGTACTTGTCGTCGCT
ACTTTCATGGAGTACTCATGGTCCGAATAATAGTAGAGGGGTCCGAATAA
AAGGAGGGGGtccaaaatcttttcaaaatctaaacgggggggggggggNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggg
tccgaaattgTACCTCCAAAAACCCCTCAAAATAATGTAATTACAATCCA
AACAAATATTGTTGGATCGCATGTAGATTGACCAAAGCAAGTGATAAATT
TTGCTCACAACCTGCAATCAGTTAAAAAAGAGGTCTTTTAATCTTTTCGT
TATACTTTAACTTTaatttaattatcattttctCATTTTACTTTTAGTGA
CGGATTTGAAATCTTCTTATATTTTGGTCCACAAATACACAACTGGTTGG
TTTACTTTTATAATACATGTTATTCGAATATTCCACCGCTGCTGTTTTAT
CAGCCGGAACATTAAAAACCCTGTGGTATCTTCCCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044730-exon-sc0006098-1491911889:1135..1232 | TCONS_00044730-exon-sc0006098-1491911889:1135..1232 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1510915933:1135..1232 | TCONS_00044730-exon-sc0006098-1510915933:1135..1232 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1575043694:1135..1232 | TCONS_00044730-exon-sc0006098-1575043694:1135..1232 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1491911889:1875..1928 | TCONS_00044730-exon-sc0006098-1491911889:1875..1928 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1510915933:1875..1928 | TCONS_00044730-exon-sc0006098-1510915933:1875..1928 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1575043694:1875..1928 | TCONS_00044730-exon-sc0006098-1575043694:1875..1928 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1491911889:2382..2522 | TCONS_00044730-exon-sc0006098-1491911889:2382..2522 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1510915933:2382..2522 | TCONS_00044730-exon-sc0006098-1510915933:2382..2522 | Clytia hemisphaerica | exon |
| TCONS_00044730-exon-sc0006098-1575043694:2382..2522 | TCONS_00044730-exon-sc0006098-1575043694:2382..2522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006098 | supercontig | sc0006098:1135..2522 + |
Blast
The following BLAST results are available for this feature:
|
