TCONS_00044720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044720
Unique NameTCONS_00044720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044720 ID=TCONS_00044720|Name=TCONS_00044720|organism=Clytia hemisphaerica|type=transcript|length=397bp
ttttttatattttcagatcATATCGGGAGGGAATTACAAGACCAAGTCTG
AACTctttcaaaaattattcaaaaatctCAACCCAGATGAAAAGTTGATA
ATTGACTACTCGTGTGCGTTCTATCGCGACATTTTGGTGCACGGACGTTT
GTACGCCTCGCAGAATTGGTTGTGTTTCTACGCTAACATTTTCGGTTGGG
AAACGCTGATCACGGTACAATGGACAGACGTCACGGCTATCACGAAAGAA
AAAACAGCCAAAGTTATCCCAAACGCTATTCAAGTTCTCACTGATCAAGA
AAagttcTTCTTTACAACTTTTGTGAACAGAGAAAATGCTTACACAGCAC
TATTTCGAATATGGCAGAACGCTCTACTCGGTCACGTAAGTTTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00044720-protein

>TCONS_00044720-protein ID=TCONS_00044720-protein|Name=TCONS_00044720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
FLYFQIISGGNYKTKSELFQKLFKNLNPDEKLIIDYSCAFYRDILVHGRL
YASQNWLCFYANIFGWETLITVQWTDVTAITKEKTAKVIPNAIQVLTDQE
KFFFTTFVNRENAYTALFRIWQNALLGHVSFL
Run BLAST on NCBI

transcript from alignment at sc0006075:14..2629-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044720 ID=TCONS_00044720|Name=TCONS_00044720|organism=Clytia hemisphaerica|type=transcript|length=2616bp|location=Sequence derived from alignment at sc0006075:14..2629- (Clytia hemisphaerica)
TTTTTTATATTTTCAGATCATATCGGGAGGGAATTACAAGACCAAGTCTG
AACTCTTTCAAAAATTATTCAAAAATCTCAACCCAGATGAAAAGTTGATA
ATTGGTAAGTCTTCTACTGAAAGTTTATGAACACGCACATCGAAAGGTTA
GCCCGGGGGGAAGTGGCGTGATTGGAAAATTTTTCTGGAGTGGCCAAGCA
GAATTTGGCGCCCTTTTTAGAGTTTTTTTCTTTTTGGCGCCCCCTCTCTA
CACATTTAATTTGCTTACGAATACAAACTAAGCACTGGAACTAAGACCAT
TTTGATCTCTAAACAACTTTATTAGGTTTTTCTCCTATCACAGGTAGTTT
CCCCCTCCCTCCTCGCGCCACCATGCCACCTATGGCTTTTTGATTGACTG
GGTAGCGCGGATAAGTACCCTGGTTTTATATGACAGGCTTTATTTTATGG
CTTTACCTAAGTACACAATAAATCTATACCACTAGATCAAGTCTCATTTT
GGGAAAAGCCAAACAGAGAAACTATGACTAATTTTTTCAAATTTTGGAGG
TATTTTCATGTTTTTATTGTAGTTTCATAATTTTTTGGGGGGTTTTGGAA
TATGTTTTATTGTTTTGGTAGAAAAAAAAGTTTAAAATGTTAGTATCCTC
TTATCCACTTCAATGAACTCACCGGCGCCATCAAAAATCATCAGAAAGCA
AAAATCATATTGAAAGGTTGACGAGCGGTGGAAAAACTTCAATAAAATAA
AGATTATTGACTTACCTCGATATTTGCATCTCTCCATGCAACATAATAAA
TTTAATAAAGTTTTCCTTGAAATGAAAAAGATATACAAAGATGAAAAAGA
ATCAGGTCTACAACAGGATCCTTTGCCAGCTTTTTACGATTTTTGTCTCT
CTCTCTTAATCTTATCTAGAACGTAGATTTGACGGGTTATATACACTTTT
TTCTTTTGCCACAGACTACTCGTGTGCGTTCTATCGCGACATTTTGGTGC
ACGGACGTTTGTACGCCTCGCAGAATTGGTTGTGTTTCTACGCTAACATT
TTCGGTTGGGAAACGCTGGTGAGTTGTTTGTATCCTCATGAACTTTACTT
AGAAAGGAACCATGTTCCGCAGACGTTACGGTCTCGTATCGCTCCGGTTT
GTTATTTACTACAGATAGGAAGTGTTCATACTGATTTCGGAACGTCTCGC
AGCAACGAAACGGAATAATTCCGTCCCGATGAAAATGGTGGAGCGAAACC
GTTTCGATCTGTTTTGCTCTGTAACGCTTTCTTTTCTGACGTTTCGAATT
TTGATGTCAACATGGTGTTTCGGAACCGTTTCGTTTCGGAGCAGTACAAA
ACCGTAACGTCTGAACATGGTCTTAGAAAGGAAGCATAAGCTGACAAAGG
AATAATGTAACCCCAATAACAACGTGTTGCAGAGATTTTATTCGAGGTAG
AAATAATTTGAGATGGGGAGTGGAAATTTTTGAAAATCAGTTTCATTCCT
TTTTCTATACTAGTCCAATAAAAGGCTTTATATTTGAAACCTTGGAAATT
TTTGTGGTCCAGAAACCTGTTTTACCTGTTTTATCGTTCGGCATAATGTA
TTTCAACACTTTCATATTTTTATCTATTTTAAATCAACAAACTTAATCCA
AACTAGGCTTTTGTACTTCTTGTCAAGAAAACCTGTTTCAGGTTCAGGAT
TTCTAGAGTTCAGAAGCTTATCAGGGGGTTCCTCACGAAGATGAAGGTTA
AATTGACCAGATGCTTATTACGTAACATTCTCGTAACATTCTTTACCGTT
CCCGTTCACGCAGATCACGGTACAATGGACAGACGTCACGGCTATCACGA
AAGAAAAAACAGCCAAAGTTATCCCAAACGCTATTCAAGTTCTCACTGAT
CAAGAAAAGGTTTGATTTTTTCTGAGTCCTCAAAACATCAAAAGGGTGCT
TTATAAAAGGAAGGCGGACGCTCAAAATTGACGGCGTCCTCTTTGGTGCT
GTCTTCTTGGTTTGACGGTTTGGAAATATCTAACAAAGAGGAAAGAAAAG
ATTTTTTCCTAGTGTTATTGATTTGGAGGAGACTGAAAAATATGATTGCG
TCGCTTCTAGGCGGGAAGACGGCTTGCTATTTTACTCGTCCTAGGCCCGT
TGCCTTCGAGGAAAACCCAATCTTCGTCCACTTCCTTCTTCTAAAACACC
CTAAATATTGACCGAGGATTCGATTGCTTGTTGGGGTGGGGTATTGAACA
TAGATGCGAGACACTAGAAACACTGTTTTCTGGGGGTTTCCTGTAGCACC
CAAGAAATGCCAATTTTATTCAGTGAACAAAACTAAAATGATTCATTTTG
TCTTGTTCATCCAGTCATGACACACTTTGATACCTCTACAGTTTCAAGCT
TTTTTTGTGGGCCTAATGAATTTCCTGGATTGTAAAGGATCTGTTTACGG
CAGTTTTGAAAATAACAATTTCCTTCCACTGTGTAGTGTATTGAAACTGC
TCTCCTTCTTCTTTATTTTTCAGTTCTTCTTTACAACTTTTGTGAACAGA
GAAAATGCTTACACAGCACTATTTCGAATATGGCAGAACGCTCTACTCGG
TCACGTAAGTTTCTTG

Coding sequence (CDS) from alignment at sc0006075:14..2629-

>TCONS_00044720 ID=TCONS_00044720|Name=TCONS_00044720|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0006075:14..2629- (Clytia hemisphaerica)
TTCTTCTTTACAACTTTTGTGAACAGAGAAAATGCTTACACAGCACTATT
TCGAATATGGCAGAACGCTCTACTCGGTCACGTAAGTTTCTTGATCACGG
TACAATGGACAGACGTCACGGCTATCACGAAAGAAAAAACAGCCAAAGTT
ATCCCAAACGCTATTCAAGTTCTCACTGATCAAGAAAAGACTACTCGTGT
GCGTTCTATCGCGACATTTTGGTGCACGGACGTTTGTACGCCTCGCAGAA
TTGGTTGTGTTTCTACGCTAACATTTTCGGTTGGGAAACGCTGTTTTTAT
ATTTTCAGATCATATCGGGAGGGAATTACAAGACCAAGTCTGAACTCTTT
CAAAAATTATTCAAAAATCTCAACCCAGATGAAAAGTTGATAATTGTTCT
TCTTTACAACTTTTGTGAACAGAGAAAATGCTTACACAGCACTATTTCGA
ATATGGCAGAACGCTCTACTCGGTCACGTAAGTTTCTTGATCACGGTACA
ATGGACAGACGTCACGGCTATCACGAAAGAAAAAACAGCCAAAGTTATCC
CAAACGCTATTCAAGTTCTCACTGATCAAGAAAAGACTACTCGTGTGCGT
TCTATCGCGACATTTTGGTGCACGGACGTTTGTACGCCTCGCAGAATTGG
TTGTGTTTCTACGCTAACATTTTCGGTTGGGAAACGCTGTTTTTATATTT
TCAGATCATATCGGGAGGGAATTACAAGACCAAGTCTGAACTCTTTCAAA
AATTATTCAAAAATCTCAACCCAGATGAAAAGTTGATAATTGTTCTTCTT
TACAACTTTTGTGAACAGAGAAAATGCTTACACAGCACTATTTCGAATAT
GGCAGAACGCTCTACTCGGTCACGTAAGTTTCTTGATCACGGTACAATGG
ACAGACGTCACGGCTATCACGAAAGAAAAAACAGCCAAAGTTATCCCAAA
CGCTATTCAAGTTCTCACTGATCAAGAAAAGACTACTCGTGTGCGTTCTA
TCGCGACATTTTGGTGCACGGACGTTTGTACGCCTCGCAGAATTGGTTGT
GTTTCTACGCTAACATTTTCGGTTGGGAAACGCTGTTTTTATATTTTCAG
ATCATATCGGGAGGGAATTACAAGACCAAGTCTGAACTCTTTCAAAAATT
ATTCAAAAATCTCAACCCAGATGAAAAGTTGATAATTGTTCTTCTTTACA
ACTTTTGTGAACAGAGAAAATGCTTACACAGCACTATTTCGAATATGGCA
GAACGCTCTACTCGGTCACGTAAGTTTCTTGATCACGGTACAATGGACAG
ACGTCACGGCTATCACGAAAGAAAAAACAGCCAAAGTTATCCCAAACGCT
ATTCAAGTTCTCACTGATCAAGAAAAGACTACTCGTGTGCGTTCTATCGC
GACATTTTGGTGCACGGACGTTTGTACGCCTCGCAGAATTGGTTGTGTTT
CTACGCTAACATTTTCGGTTGGGAAACGCTGTTTTTATATTTTCAGATCA
TATCGGGAGGGAATTACAAGACCAAGTCTGAACTCTTTCAAAAATTATTC
AAAAATCTCAACCCAGATGAAAAGTTGATAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028335XLOC_028335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044720-exon-sc0006075-1575043694:2526..2629TCONS_00044720-exon-sc0006075-1575043694:2526..2629Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1575043694:1562..1665TCONS_00044720-exon-sc0006075-1575043694:1562..1665Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1575043694:721..816TCONS_00044720-exon-sc0006075-1575043694:721..816Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1575043694:14..106TCONS_00044720-exon-sc0006075-1575043694:14..106Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1510915933:2526..2629TCONS_00044720-exon-sc0006075-1510915933:2526..2629Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1510915933:1562..1665TCONS_00044720-exon-sc0006075-1510915933:1562..1665Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1510915933:721..816TCONS_00044720-exon-sc0006075-1510915933:721..816Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1510915933:14..106TCONS_00044720-exon-sc0006075-1510915933:14..106Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1491911889:2526..2629TCONS_00044720-exon-sc0006075-1491911889:2526..2629Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1491911889:1562..1665TCONS_00044720-exon-sc0006075-1491911889:1562..1665Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1491911889:721..816TCONS_00044720-exon-sc0006075-1491911889:721..816Clytia hemisphaericaexon
TCONS_00044720-exon-sc0006075-1491911889:14..106TCONS_00044720-exon-sc0006075-1491911889:14..106Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044720-proteinTCONS_00044720-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006075supercontigsc0006075:14..2629 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.6648	24.2911	11.9654	6.27124	15.7782	13.0715	20.8652	24.5307	21.3091	25.8039	40.5323	17.721	11.6721	11.7305	12.8588	17.9393	20.9664	24.9747	15.4465	13.4348	23.9019	33.6405	31.1577	32.6546	53.6919	55.1518	12.938	9.11316	17.1753	20.9133
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004182GRAM
Blast
[Close]
BLAST of TCONS_00044720 vs. Swiss-Prot (Human)
Match: GRM1B (GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.744e-48
Identity = 72/115 (62.61%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:   35 YKTKSELFQKLFKNLNPDEKLIIDYSCAFYRDILVHGRLYASQNWLCFYANIFGWETLITVQWTDVTAITKEKTAKVIPNAIQVLTDQEKFFFTTFVNRENAYTALFRIWQNALL 379
            YK ++E F+KLFK L   E+LI+DYSCA  RDIL+ GRLY S+NW+CFY+NIF WETL+TV+  D+ ++TKEKTA++IPNAIQV TD EK FFT+F  R+  Y  +FR+WQNALL
Sbjct:   91 YKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALL 205
The following BLAST results are available for this feature:
BLAST of TCONS_00044720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM1B5.744e-4862.61GRAM domain-containing protein 1B OS=Homo sapiens ... [more]
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