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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044711 ID=TCONS_00044711|Name=TCONS_00044711|organism=Clytia hemisphaerica|type=transcript|length=2545bp
AATGCCTAGATTTGTTTTGCTTGATGTATATtaccttttttcatttttca
ggatgacaattttcaaaatataaaaaggaAGGAATTTTAAAGGAATTGTA
AAGATAATAATGGCTTTGAGGAGGCAAGTGAAAAATGTTGTTAAGAATTT
CTCTGACATTGAAGTGAAGGTTAGAGAAGCAACCAGTAATGATCCATGGG
GTCCATCCAGCTCAATTACAAGTGAAATTGCTGATGCCACATACAATGTG
CAAGCATTCACAGAAATAATGACCTTACTATGGAAGCGAATTAATGACCA
TGGTAAAAATTGGAGACATGTTTATAAATCCCTTGTAGTATTAGAGTACA
TTGTTAAAACTGGAAGTGAAAGAGTTGCACAACAATGCAAGGAGAATATT
TTTGCTATTAAAACACTGAAAGATTTTCAATTCATAGATAAAGATGGCAA
AGATCAAGGAGTGAATGTGCGTGAAAAATCAAAAGCTCTTGTTGGTTTAT
TAAAAGATGAAGAGCGCCTAAAAGCAGAACGACAGCGTGCCTTAAAAGct
aaagaaagattttcacaGTCTCAAGGTGGTATTGGTAACACAAATTatcc
caaaaatcgaaaatatcaaGCAAGCACAAAATACCCTGAAGCTAAGGGAA
GCTTAGATGACTCCAATATATCAAGTAGACCTGCTACATTGAATGCTGAG
CGTGATGCTGATTCTCGTTCTACAGACGGTCGTATTGATTCTGATATTGA
AAAAGTAAGACCTTCCAATGAAGTCGAGGAGGAAATGCAACTTCAAATTG
CACTTGCAATGAGTCGTGAAGAAGccgaaaaagataaaaaaacacaaGAT
ATTGAAGCAAAGCTCTTCAGCAATTTAGGTGGTGCCCATCAGCCACAAGC
TCCTCAACAGTCTTCTACACTTTTGAATCTGACTGACTCGTCAAGTTCAA
CCAACCAACCGAGTGATCCTTGGGGAATAGCACCACCACCGTCAACAAAC
ACTGATCCTTGGGGATCAGCTCCTACAAACCCTCCACAGCCAACTGTACC
CTCTGCAAATGTATCTAGTGACCCATGGGGATCTGCCGCTCCCGTAAGTC
AACCAGCTGCAGATCCTTGGGGATCACAACCTCCTGCACCAGCTCCAGAG
CCTGCTATTGACCCTTGGGGTTCAGCACCAGTGAGTCAACCAGAAGTTGA
TCCTTTTGCTCCTCAGAGTTCTACACTACCTGCCATGTCAAGTTATCCTT
CACAAAGCTTGAGTGCAATTCAAGCATCAACATTACCACCAATGTCAACT
TACAGTACTACACCTTTGCAGCCTGTTGGAGGAACTGACGTAGATCCTTT
TGGTTCCCTGGTGACAACTACATCAGCACCTGAAGCAAACagtaatttat
ttttatcaaatggAAGCCATCTGGTGGACGTTGATAATATAATGGCAACA
CCTAATGCAGCACCACCAGCAGCTAATCCTTTCATGACATCAGCAACCAA
TACCAATCCTTTCCAACAAGATAAACCAAAACCTAAATCAATAAATGAGT
TGAGAAGTGATAAAAACAGTACCTTTGTACAGCCTGGTTCTGGCAACTCC
TCAGTTTTATTACCACAGCCTATGCAACCATCACAAAATAACCCTTTCTT
ATGAGATTATTCAAGTTGTTAGATCTATAAATTGCAAGGTAATGCAATGG
TTTTGAAAGATAACCTTTGGTTACGGTTGAGCAATGATATTGCTGAGTGT
GGATTCAACAAAGACACTGGACAATATAGTGGTGAAAGGTCCTTGGAACC
AAAATATTGATTAACAATGAAAAGAGACTGAATATTTCCCTCAATATGAT
TGTATGAAACTGAAAGTTTTTCgtagtttattttaatttttatatgtGTT
ATTGTTATAATTATTGTTTATTAAGAATATTCAAATTCGGGAcctttttc
tttctatttttactGCTAGCTGCCATGATTAGCAGTTCGAGATTCATTTC
AGAATTTCAGATTTGtataaattttaaatgaaaCCTTCTCTAGAGctata
aaaactttatatagCTGTTCTATCTAATTCAAGGAGACAAAAAAGCACAA
AAGAGTgaacttttttaatcaattttgtcgtaaaattttaaaacaaattt
ttgtaatttttgtttcatatttATTATGCCTATTTTTCTGTTTGATGGGG
CTATTACTGACAACCCCTTCTTTCTTGATAGCAGCAATTAATTTTTCTCT
ATATATTATAATACTATATCGTTTCAAGAAATAATGTATTCCATGCAAAA
CTATTATATTGAAATTATTtgcataattatttttcttctcacttttagta
gggggaaatttgttcgtttttttgaggtcgctcgattatTTTGGTCAAAg
gacttgttatacatttttggaaagataaggggtaggggaatcaaaatttc
aatatttccaattttttttcggacactttggtgtgatttttggacaaata
tgacggtctcaggcaaaaatcatagggtcaaaaattaatgaaaat Run BLAST on NCBI protein sequence of TCONS_00044711-protein >TCONS_00044711-protein ID=TCONS_00044711-protein|Name=TCONS_00044711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MALRRQVKNVVKNFSDIEVKVREATSNDPWGPSSSITSEIADATYNVQAF
TEIMTLLWKRINDHGKNWRHVYKSLVVLEYIVKTGSERVAQQCKENIFAI
KTLKDFQFIDKDGKDQGVNVREKSKALVGLLKDEERLKAERQRALKAKER
FSQSQGGIGNTNYPKNRKYQASTKYPEAKGSLDDSNISSRPATLNAERDA
DSRSTDGRIDSDIEKVRPSNEVEEEMQLQIALAMSREEAEKDKKTQDIEA
KLFSNLGGAHQPQAPQQSSTLLNLTDSSSSTNQPSDPWGIAPPPSTNTDP
WGSAPTNPPQPTVPSANVSSDPWGSAAPVSQPAADPWGSQPPAPAPEPAI
DPWGSAPVSQPEVDPFAPQSSTLPAMSSYPSQSLSAIQASTLPPMSTYST
TPLQPVGGTDVDPFGSLVTTTSAPEANSNLFLSNGSHLVDVDNIMATPNA
APPAANPFMTSATNTNPFQQDKPKPKSINELRSDKNSTFVQPGSGNSSVL
LPQPMQPSQNNPFL Run BLAST on NCBI transcript from alignment at sc0006056:1..2545 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044711 ID=TCONS_00044711|Name=TCONS_00044711|organism=Clytia hemisphaerica|type=transcript|length=2545bp|location=Sequence derived from alignment at sc0006056:1..2545 (Clytia hemisphaerica)
attttcattaatttttgaccctatgatttttgcctgagaccgtcatattt
gtccaaaaatcacaccaaagtgtccgaaaaaaaattggaaatattgaaat
tttgattcccctaccccttatctttccaaaaatgtataacaagtccTTTG
ACCAAAataatcgagcgacctcaaaaaaacgaacaaatttccccctacta
aaagtgagaagaaaaataattatgcaAATAATTTCAATATAATAGTTTTG
CATGGAATACATTATTTCTTGAAACGATATAGTATTATAATATATAGAGA
AAAATTAATTGCTGCTATCAAGAAAGAAGGGGTTGTCAGTAATAGCCCCA
TCAAACAGAAAAATAGGCATAATaaatatgaaacaaaaattacaaaaatt
tgttttaaaattttacgacaaaattgattaaaaaagttcACTCTTTTGTG
CTTTTTTGTCTCCTTGAATTAGATAGAACAGctatataaagtttttatag
CTCTAGAGAAGGtttcatttaaaatttataCAAATCTGAAATTCTGAAAT
GAATCTCGAACTGCTAATCATGGCAGCTAGCagtaaaaatagaaagaaaa
aggTCCCGAATTTGAATATTCTTAATAAACAATAATTATAACAATAACac
atataaaaattaaaataaactacGAAAAACTTTCAGTTTCATACAATCAT
ATTGAGGGAAATATTCAGTCTCTTTTCATTGTTAATCAATATTTTGGTTC
CAAGGACCTTTCACCACTATATTGTCCAGTGTCTTTGTTGAATCCACACT
CAGCAATATCATTGCTCAACCGTAACCAAAGGTTATCTTTCAAAACCATT
GCATTACCTTGCAATTTATAGATCTAACAACTTGAATAATCTCATAAGAA
AGGGTTATTTTGTGATGGTTGCATAGGCTGTGGTAATAAAACTGAGGAGT
TGCCAGAACCAGGCTGTACAAAGGTACTGTTTTTATCACTTCTCAACTCA
TTTATTGATTTAGGTTTTGGTTTATCTTGTTGGAAAGGATTGGTATTGGT
TGCTGATGTCATGAAAGGATTAGCTGCTGGTGGTGCTGCATTAGGTGTTG
CCATTATATTATCAACGTCCACCAGATGGCTTccatttgataaaaataaa
ttactGTTTGCTTCAGGTGCTGATGTAGTTGTCACCAGGGAACCAAAAGG
ATCTACGTCAGTTCCTCCAACAGGCTGCAAAGGTGTAGTACTGTAAGTTG
ACATTGGTGGTAATGTTGATGCTTGAATTGCACTCAAGCTTTGTGAAGGA
TAACTTGACATGGCAGGTAGTGTAGAACTCTGAGGAGCAAAAGGATCAAC
TTCTGGTTGACTCACTGGTGCTGAACCCCAAGGGTCAATAGCAGGCTCTG
GAGCTGGTGCAGGAGGTTGTGATCCCCAAGGATCTGCAGCTGGTTGACTT
ACGGGAGCGGCAGATCCCCATGGGTCACTAGATACATTTGCAGAGGGTAC
AGTTGGCTGTGGAGGGTTTGTAGGAGCTGATCCCCAAGGATCAGTGTTTG
TTGACGGTGGTGGTGCTATTCCCCAAGGATCACTCGGTTGGTTGGTTGAA
CTTGACGAGTCAGTCAGATTCAAAAGTGTAGAAGACTGTTGAGGAGCTTG
TGGCTGATGGGCACCACCTAAATTGCTGAAGAGCTTTGCTTCAATATCtt
gtgtttttttatctttttcggCTTCTTCACGACTCATTGCAAGTGCAATT
TGAAGTTGCATTTCCTCCTCGACTTCATTGGAAGGTCTTACTTTTTCAAT
ATCAGAATCAATACGACCGTCTGTAGAACGAGAATCAGCATCACGCTCAG
CATTCAATGTAGCAGGTCTACTTGATATATTGGAGTCATCTAAGCTTCCC
TTAGCTTCAGGGTATTTTGTGCTTGCttgatattttcgatttttgggatA
ATTTGTGTTACCAATACCACCTTGAGACtgtgaaaatctttctttagCTT
TTAAGGCACGCTGTCGTTCTGCTTTTAGGCGCTCTTCATCTTTTAATAAA
CCAACAAGAGCTTTTGATTTTTCACGCACATTCACTCCTTGATCTTTGCC
ATCTTTATCTATGAATTGAAAATCTTTCAGTGTTTTAATAGCAAAAATAT
TCTCCTTGCATTGTTGTGCAACTCTTTCACTTCCAGTTTTAACAATGTAC
TCTAATACTACAAGGGATTTATAAACATGTCTCCAATTTTTACCATGGTC
ATTAATTCGCTTCCATAGTAAGGTCATTATTTCTGTGAATGCTTGCACAT
TGTATGTGGCATCAGCAATTTCACTTGTAATTGAGCTGGATGGACCCCAT
GGATCATTACTGGTTGCTTCTCTAACCTTCACTTCAATGTCAGAGAAATT
CTTAACAACATTTTTCACTTGCCTCCTCAAAGCCATTATTATCTTTACAA
TTCCTTTAAAATTCCTtcctttttatattttgaaaattgtcatcctgaaa
aatgaaaaaaggtaATATACATCAAGCAAAACAAATCTAGGCATT Coding sequence (CDS) from alignment at sc0006056:1..2545 >TCONS_00044711 ID=TCONS_00044711|Name=TCONS_00044711|organism=Clytia hemisphaerica|type=CDS|length=1545bp|location=Sequence derived from alignment at sc0006056:1..2545 (Clytia hemisphaerica)
TCATAAGAAAGGGTTATTTTGTGATGGTTGCATAGGCTGTGGTAATAAAA
CTGAGGAGTTGCCAGAACCAGGCTGTACAAAGGTACTGTTTTTATCACTT
CTCAACTCATTTATTGATTTAGGTTTTGGTTTATCTTGTTGGAAAGGATT
GGTATTGGTTGCTGATGTCATGAAAGGATTAGCTGCTGGTGGTGCTGCAT
TAGGTGTTGCCATTATATTATCAACGTCCACCAGATGGCTTccatttgat
aaaaataaattactGTTTGCTTCAGGTGCTGATGTAGTTGTCACCAGGGA
ACCAAAAGGATCTACGTCAGTTCCTCCAACAGGCTGCAAAGGTGTAGTAC
TGTAAGTTGACATTGGTGGTAATGTTGATGCTTGAATTGCACTCAAGCTT
TGTGAAGGATAACTTGACATGGCAGGTAGTGTAGAACTCTGAGGAGCAAA
AGGATCAACTTCTGGTTGACTCACTGGTGCTGAACCCCAAGGGTCAATAG
CAGGCTCTGGAGCTGGTGCAGGAGGTTGTGATCCCCAAGGATCTGCAGCT
GGTTGACTTACGGGAGCGGCAGATCCCCATGGGTCACTAGATACATTTGC
AGAGGGTACAGTTGGCTGTGGAGGGTTTGTAGGAGCTGATCCCCAAGGAT
CAGTGTTTGTTGACGGTGGTGGTGCTATTCCCCAAGGATCACTCGGTTGG
TTGGTTGAACTTGACGAGTCAGTCAGATTCAAAAGTGTAGAAGACTGTTG
AGGAGCTTGTGGCTGATGGGCACCACCTAAATTGCTGAAGAGCTTTGCTT
CAATATCttgtgtttttttatctttttcggCTTCTTCACGACTCATTGCA
AGTGCAATTTGAAGTTGCATTTCCTCCTCGACTTCATTGGAAGGTCTTAC
TTTTTCAATATCAGAATCAATACGACCGTCTGTAGAACGAGAATCAGCAT
CACGCTCAGCATTCAATGTAGCAGGTCTACTTGATATATTGGAGTCATCT
AAGCTTCCCTTAGCTTCAGGGTATTTTGTGCTTGCttgatattttcgatt
tttgggatAATTTGTGTTACCAATACCACCTTGAGACtgtgaaaatcttt
ctttagCTTTTAAGGCACGCTGTCGTTCTGCTTTTAGGCGCTCTTCATCT
TTTAATAAACCAACAAGAGCTTTTGATTTTTCACGCACATTCACTCCTTG
ATCTTTGCCATCTTTATCTATGAATTGAAAATCTTTCAGTGTTTTAATAG
CAAAAATATTCTCCTTGCATTGTTGTGCAACTCTTTCACTTCCAGTTTTA
ACAATGTACTCTAATACTACAAGGGATTTATAAACATGTCTCCAATTTTT
ACCATGGTCATTAATTCGCTTCCATAGTAAGGTCATTATTTCTGTGAATG
CTTGCACATTGTATGTGGCATCAGCAATTTCACTTGTAATTGAGCTGGAT
GGACCCCATGGATCATTACTGGTTGCTTCTCTAACCTTCACTTCAATGTC
AGAGAAATTCTTAACAACATTTTTCACTTGCCTCCTCAAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044711-exon-sc0006056-1491911889:1..2545 | TCONS_00044711-exon-sc0006056-1491911889:1..2545 | Clytia hemisphaerica | exon |
| TCONS_00044711-exon-sc0006056-1510915933:1..2545 | TCONS_00044711-exon-sc0006056-1510915933:1..2545 | Clytia hemisphaerica | exon |
| TCONS_00044711-exon-sc0006056-1575043694:1..2545 | TCONS_00044711-exon-sc0006056-1575043694:1..2545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006056 | supercontig | sc0006056:1..2545 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00044711 vs. Swiss-Prot (Human)
Match: EPN2 (Epsin-2 OS=Homo sapiens GN=EPN2 PE=1 SV=3) HSP 1 Score: 306.22 bits (783), Expect = 5.527e-92 Identity = 183/405 (45.19%), Postives = 243/405 (60.00%), Query Frame = 2
Query: 113 ALRRQVKNVVKNFSDIEVKVREATSNDPWGPSSSITSEIADATYNVQAFTEIMTLLWKRINDHGKNWRHVYKSLVVLEYIVKTGSERVAQQCKENIFAIKTLKDFQFIDKDGKDQGVNVREKSKALVGLLKDEERLKAERQRALKAKERFSQSQGGIGN--------TNYPKNRKYQASTKYPEAKGS-------------------------------------LDDSNISSRP------ATLNAERDADSRSTDGRIDSDIEKVRPSNEVEEEMQLQIALAMSREEAEKDKKTQ---DIEAKLF---SNLGGAHQPQAPXXXXXXXXXXXXXXXXXXPS--------DPWGIAPPPSTN-TDPWGSAPTNPPQPTVPSANVSSDPWGSAAPVSQPAA--DPWG 1123
++RRQ+KN+V N+S+ E+KVREATSNDPWGPSSS+ +EIAD TYNV AF+EIM+++WKR+NDHGKNWRHVYK+L +L+Y++KTGSERVAQQC+ENIFAI+TLKDFQ+ID+DGKDQG+NVREKSK LV LLKDEERLKAER +ALK KER +Q G+G+ ++ P + +Y +A GS L ++SRP L +R A R+T R+ S++E+ RP EEE+QLQ+ALAMSRE AE++++ + D+ ++ S P+ + S T PS +PWG P STN T+PWG P P++ +SDPW S ++PAA DPWG
Sbjct: 5 SIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTSHSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPNGDWSQPCLTCDRAA--RATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWG--PSASTNQTNPWGG-------PAAPAS--TSDPWPSFG--TKPAASIDPWG 394
The following BLAST results are available for this feature:
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