TCONS_00044707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044707
Unique NameTCONS_00044707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044707 ID=TCONS_00044707|Name=TCONS_00044707|organism=Clytia hemisphaerica|type=transcript|length=2288bp
AAGCGATTGAAAATATGACCATGACCAAAACAGTAAAGCAAGCATGGAGC
AAAAACACATAAGGatcattttattgaaaagtagaaaatagatATATtgt
gaaatgaaataaattgaTCTAAATTGTAGATATATATACTCTCACGACGA
TCGAAATAGACTTAAAAAAATTCTTGCGAAAACAACTGGAACTCGTGTTG
AGGCGAATCCTTTTTCAGTGACAAAAATTAGATGTTAATTAATTTCTAGT
GAAAACTCAAAGAATAGTATGGTTCATTTTCGAATTCCAAAACTTCAATA
TTTCGGAAAAACTTCCTTCCAGGAACTAAATATGAACTAATATGAAAAGA
CGTTACACTACTTacaaatggtcaaaaaataccaaatttattCCTCTTGT
ATAAGAGGTTGGTGAGTGTTCTCAGCTTCAGCATTTTTATCAACATTATT
TGGTTCAGAAGTCTTTATTGCTTCCTCCATTTGAGACAGATTCCCAACAA
CCGCCTGGGCGGTAGAAGGTGTACTACAATCACTAATGGGCGTGTTGAGA
ATAGATGTTTCAACATTAGAGGATGCGATTTCCGCTACAGGCTCTTCCAT
AACTTGAATATGTTGCGCTGTAATAGAGGGTGTTATTATCATTTCAGTAA
TTGGTTCTGTGCTTATTTCTGAGATCGTTTCGGTGTCCAGTCTAGTTGGT
TGCACGTCAGGCTCGAGTATAACATCCTCAGTCGCGGGTATCGGATCAGC
AACATTGGAGACTGTTTGCTCAGTGAGAGGAATTTGTATCTCTGGTGCTT
GATGGATGATTTGCTGTTGGAAAAGCTGATCTATAGATTGTTGTTGGAGA
ATTTCTCCAGGGATTTGTGGCTGTTGGGTTTCTGTAGCTATCGATGGTAA
AGATTCTTCAGTCGAACAAGCCGTATCTACAATAGATAGTTGACTATTCT
CGACTTGTAAAGGAACTTGAGGAAGGACGGTCGCGTTACTGGCAAGTAAT
TCTAGCATAGCTGTTGCTGCCATATTTGTTGTGGAGTCGATATGCGAGAG
ATGGGTGGCAGTGGGTGTGGCGACTTCGGGTGGATTCTGAAGGACTGTAT
CCCCAGTGGTGATCAACTTGGCTGCTTCTAAAAGGCTGTCAAGAGAACTG
CCGATGTTTCCCATAGCCGGCGGTGTCGGTACAGGGGAGGGAGGTTGACC
TTCGTCTTTACTGGTGGAACTTGTTCTTCGTCGTTTTCGAGGAGACGGCT
TGCGGTCAAGTTCGTCCGCATAAGGCACCCGCGTACGCAACACGCGGCCG
CTTCGTGTGATATAAGGTGGTGGTTCTTCTTTTGGAGGCTCTTCCTTAGG
TATTTTGACTTCCACTGGTTTCTTGGGTGCTTTCGGCTTCATTTCGATCT
TGGTTGTGATctcttttttgatgattttggcaGGTATGGTTTTGGTTTGA
TTGGGTTGGACAGCGCGAACTTGTGATGACATGCGAATAAAGTCATTAGA
CTTGATGGTGACAGGAAGAACTTTACTTGTGGTCGCCGTACGAATGGTAG
CAGCAGGTGTACTTAAGACATGCGCAGTTGTCTTATTCCCACCCGAGAAC
AATGCAGGTGTAGTCGGTTTTGTTGTGATCAGATTCTTATTCAAAGAGCT
GAAAGAGATACCAGCGGGTTTAGCGGAGAGTTTGGTGTCACTCATGAAAG
CGGTACGAGCGATCATTGCTGCTGTCTTTGAACTTACCACTGTCGGTTTT
GCAAGGATGGTGCTTCTAGCGTGCTCTTCCAACAGTATCTTCCCACTTTC
ACTTAACGAGCCTAAAGTGGCAGTTGGTGGACGACTGGTGCGGCTTGTCG
GTAAATGAAGCGGTTCAAAACGAAGTTTGTTGCTGTCTAAGGCTCCAGTT
GATGCAGCATCTAGATGCCTGGTTTCAGCGGCACTCTTCACTTGTTGGAA
CGCAACGCCCACTTTACGCGCACTGTTCATGAGCTGACTTTCAGATAGTT
TTGATTTCGATAACTCTAAGAGATTTTTGCCCGCGAAGAAGCGGCGATCA
CCGCTAGAGACAGGAACGCGGATGATTTTGGAGCTGGTTGATAGTGGGAT
GGTTGCGATGGTTGTGGTGGGGAAGGCGGTGGATGATGAGGATGTCTGTG
GAGGTTGTGGGTTGCCCGAGAACTTCTTGCTGACACCTGTCGGGATAACA
TTGAAGTCGATATCGCTCTCATCAATCACCTCACTATCCTTCGTCCCTTC
TTCTTCCATTGCTCGTGGTTGTATCGGTGACATGTCGC
Run BLAST on NCBI

transcript from alignment at sc0006046:323..2728+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044707 ID=TCONS_00044707|Name=TCONS_00044707|organism=Clytia hemisphaerica|type=transcript|length=2406bp|location=Sequence derived from alignment at sc0006046:323..2728+ (Clytia hemisphaerica)
AAGCGATTGAAAATATGACCATGACCAAAACAGTAAAGCAAGCATGGAGC
AAAAACACATAAGGatcattttattgaaaagtagaaaatagatATATtgt
gaaatgaaataaattgaTCTAAATTGTAGATATATATACTCTCACGACGA
TCGAAATAGACTTAAAAAAATTCTTGCGAAAACAACTGGAACTCGTGTTG
AGGCGAATCCTTTTTCAGTGACAAAAATTAGATGTTAATTAATTTCTAGT
GAAAACTCAAAGAATAGTATGGTTCATTTTCGAATTCCAAAACTTCAATA
TTTCGGAAAAACTTCCTTCCAGGAACTAAATATGAACTAATATGAAAAGA
CGTTACACTACTTacaaatggtcaaaaaataccaaatttattCCTCTTGT
ATAAGAGGTTGGTGAGTGTTCTCAGCTTCAGCATTTTTATCAACATTATT
TGGTTCAGAAGTCTTTATTGCTTCCTCCATTTGAGACAGATTCCCAACAA
CCGCCTGGGCGGTAGAAGGTGTACTACAATCACTAATGGGCGTGTTGAGA
ATAGATGTTTCAACATTAGAGGATGCGATTTCCGCTACAGGCTCTTCCAT
AACTTGAATATGTTGCGCTGTAATAGAGGGTGTTATTATCATTTCAGTAA
TTGGTTCTGTGCTTATTTCTGAGATCGTTTCGGTGTCCAGTCTAGTTGGT
TGCACGTCAGGCTCGAGTATAACATCCTCAGTCGCGGGTATCGGATCAGC
AACATTGGAGACTGTTTGCTCAGTGAGAGGAATTTGTATCTCTGGTGCTT
GATGGATGATTTGCTGTTGGAAAAGCTGATCTATAGATTGTTGTTGGAGA
ATTTCTCCAGGGATTTGTGGCTGTTGGGTTTCTGTAGCTATCGATGGTAA
AGATTCTTCAGTCGAACAAGCCGTATCTACAATAGATAGTTGACTATTCT
CGACTTGTAAAGGAACTTGAGGAAGGACGGTCGCGTTACTGGCAAGTAAT
TCTAGCATAGCTGTTGCTGCCATATTTGTTGTGGAGTCGATATGCGAGAG
ATGGGTGGCAGTGGGTGTGGCGACTTCGGGTGGATTCTGAAGGACTGTAT
CCCCAGTGGTGATCAACTTGGCTGCTTCTAAAAGGCTGTCAAGAGAACTG
CCGATGTTTCCCATAGCCGGCGGTGTCGGTACAGGGGAGGGAGGTTGACC
TTCGTCTTTACTGGTGGAACTTGTTCTTCGTCGTTTTCGAGGAGACGGCT
TGCGGTCAAGTTCGTCCGCATAAGGCACCCGCGTACGCAACACGCGGCCG
CTTCGTGTGATATAAGGTGGTGGTTCTTCTTTTGGAGGCTCTTCCTTAGG
TATTTTGACTTCCACTGGTTTCTTGGGTGCTTTCGGCTTCATTTCGATCT
TGGTTGTGATctcttttttgatgattttggcaGGTATGGTTTTGGTTTGA
TTGGGTTGGACAGCGCGAACTTGTGATGACATGCGAATAAAGTCATTAGA
CTTGATGGTGACAGGAAGAACTTTACTTGTGGTCGCCGTACGAATGGTAG
CAGCAGGTGTACTTAAGACATGCGCAGTTGTCTTATTCCCACCCGAGAAC
AATGCAGGTGTAGTCGGTTTTGTTGTGATCAGNGAGAACTTTACTTGTGG
TCGCCGTGCGAATGGTAGCAGCAGGTGTACTTAAGACATGCGCAGTTGTC
TTATTCCCACCCGAGAACAATGCAGGTGTAGTCGGTTTTGTTGTGATCAG
ATTCTTATTCAAAGAGCTGAAAGAGATACCAGCGGGTTTAGCGGAGAGTT
TGGTGTCACTCATGAAAGCGGTACGAGCGATCATTGCTGCTGTCTTTGAA
CTTACCACTGTCGGTTTTGCAAGGATGGTGCTTCTAGCGTGCTCTTCCAA
CAGTATCTTCCCACTTTCACTTAACGAGCCTAAAGTGGCAGTTGGTGGAC
GACTGGTGCGGCTTGTCGGTAAATGAAGCGGTTCAAAACGAAGTTTGTTG
CTGTCTAAGGCTCCAGTTGATGCAGCATCTAGATGCCTGGTTTCAGCGGC
ACTCTTCACTTGTTGGAACGCAACGCCCACTTTACGCGCACTGTTCATGA
GCTGACTTTCAGATAGTTTTGATTTCGATAACTCTAAGAGATTTTTGCCC
GCGAAGAAGCGGCGATCACCGCTAGAGACAGGAACGCGGATGATTTTGGA
GCTGGTTGATAGTGGGATGGTTGCGATGGTTGTGGTGGGGAAGGCGGTGG
ATGATGAGGATGTCTGTGGAGGTTGTGGGTTGCCCGAGAACTTCTTGCTG
ACACCTGTCGGGATAACATTGAAGTCGATATCGCTCTCATCAATCACCTC
ACTATCCTTCGTCCCTTCTTCTTCCATTGCTCGTGGTTGTATCGGTGACA
TGTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028322XLOC_028322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044707-exon-sc0006046-1491911889:323..1878TCONS_00044707-exon-sc0006046-1491911889:323..1878Clytia hemisphaericaexon
TCONS_00044707-exon-sc0006046-1510915933:323..1878TCONS_00044707-exon-sc0006046-1510915933:323..1878Clytia hemisphaericaexon
TCONS_00044707-exon-sc0006046-1575043694:323..1878TCONS_00044707-exon-sc0006046-1575043694:323..1878Clytia hemisphaericaexon
TCONS_00044707-exon-sc0006046-1491911889:1997..2728TCONS_00044707-exon-sc0006046-1491911889:1997..2728Clytia hemisphaericaexon
TCONS_00044707-exon-sc0006046-1510915933:1997..2728TCONS_00044707-exon-sc0006046-1510915933:1997..2728Clytia hemisphaericaexon
TCONS_00044707-exon-sc0006046-1575043694:1997..2728TCONS_00044707-exon-sc0006046-1575043694:1997..2728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006046supercontigsc0006046:323..2728 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.2707	10.7074	7.15564	6.5988	14.4545	10.903	9.66001	11.6477	6.16576	8.03625	9.49221	6.26986	9.36041	11.1039	8.99613	11.991	9.55058	11.4218	7.9725	5.92229	7.2408	5.6719	12.684	11.8964	13.4668	13.1718	3.84148	3.47171	11.6155	12.7594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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