TCONS_00044703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044703
Unique NameTCONS_00044703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044703 ID=TCONS_00044703|Name=TCONS_00044703|organism=Clytia hemisphaerica|type=transcript|length=689bp
AGCAAAGAGGATATTAAAAAACCAGAGAGAAGCtgtcaatcaaaaaatat
tacatcatcattaaaacaaaaaaataattttaacatctcagcaagaaaaa
acaatcaatgTTTGTGACATCATAATCTCTCGTTGTTATGACTAAGAGAA
AGTTTCCCAATAATTCaacggtttcgtagtgtagtggttatcacgttcGC
TTTACACGCgaaaggtccccggttcgagcccgggcggaaccATGAGTTTT
TAAAAGATTCTCAGTTCAATAGTGGGAGTATCGAAGGGGAGGGGGGGGGT
GCTGTAAGCCGTACACAGTTgcatttctctaattcgatcagGGGTTAACT
TCGAACTAGAGAAAGATCCGAATTATAGAGAGCATTTTTACACCACTTTC
CAGCAGAGGgccaatgttttagttcgaattagaagTTGATCGTAATGGCT
GTAATCGCAACATTCTTTTGCAACTTTAGGCCGCTTTAGGCTTATTGTGG
GGCTTGATTGCCATGTTTCGTTGACGAAAAAGTCTAAATTTCATACTTCT
TTTTCAGTGTTACGTACTTGTTTTTCAGTGTTACAGTGGCCGCTTTTTTg
tacaacatcaaaacaacaaaaacaacataaaaatcATTCAGAATTATCAA
GAAAAATACTCTTTCATTTACAGCATCTACGAAAAAAAG
Run BLAST on NCBI

transcript from alignment at sc0006040:51..739

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044703 ID=TCONS_00044703|Name=TCONS_00044703|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at sc0006040:51..739 (Clytia hemisphaerica)
CTTTTTTTCGTAGATGCTGTAAATGAAAGAGTATTTTTCTTGATAATTCT
GAATgatttttatgttgtttttgttgttttgatgttgtacAAAAAAGCGG
CCACTGTAACACTGAAAAACAAGTACGTAACACTGAAAAAGAAGTATGAA
ATTTAGACTTTTTCGTCAACGAAACATGGCAATCAAGCCCCACAATAAGC
CTAAAGCGGCCTAAAGTTGCAAAAGAATGTTGCGATTACAGCCATTACGA
TCAActtctaattcgaactaaaacattggcCCTCTGCTGGAAAGTGGTGT
AAAAATGCTCTCTATAATTCGGATCTTTCTCTAGTTCGAAGTTAACCCct
gatcgaattagagaaatgcAACTGTGTACGGCTTACAGCACCCCCCCCCT
CCCCTTCGATACTCCCACTATTGAACTGAGAATCTTTTAAAAACTCATgg
ttccgcccgggctcgaaccggggacctttcGCGTGTAAAGCgaacgtgat
aaccactacactacgaaaccgttGAATTATTGGGAAACTTTCTCTTAGTC
ATAACAACGAGAGATTATGATGTCACAAAcattgattgttttttcttgct
gagatgttaaaattatttttttgttttaatgatgatgtaatattttttga
ttgacaGCTTCTCTCTGGTTTTTTAATATCCTCTTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028318XLOC_028318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044703-exon-sc0006040-1491911889:51..739TCONS_00044703-exon-sc0006040-1491911889:51..739Clytia hemisphaericaexon
TCONS_00044703-exon-sc0006040-1510915933:51..739TCONS_00044703-exon-sc0006040-1510915933:51..739Clytia hemisphaericaexon
TCONS_00044703-exon-sc0006040-1575043694:51..739TCONS_00044703-exon-sc0006040-1575043694:51..739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006040supercontigsc0006040:51..739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221736	0.432455	0	0.163749	0.299023	0.236292	0.380102	0.0889617	0.311421	0.154298	0.374414	0.1969	0.196626	0.0510495	0.0839393	0.13512	0	0.113742	0	0.0822179	0.142925	0.10457	0.169492	0.0770464	0.79356	0.708233	0	0.108161	0.164073	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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