TCONS_00044690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044690
Unique NameTCONS_00044690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044690 ID=TCONS_00044690|Name=TCONS_00044690|organism=Clytia hemisphaerica|type=transcript|length=223bp
TATCCCAGAGAATGTAACTTTGAAATGGCTACAGAAATCCTCAAAAATTA
AGATGAAAAGTATGGTATTTATACAACATTTTTGGTGGTGCAATAGATGG
TGTCGAAATGATGAAAAgtgataatttggaatttaaaaattgaatgctTT
TTATACGGAAACAATTTTCTGACAAGCTGACCACTGAGACACATCTTGGT
TCTATTTGTGAATGAAATTAACA
Run BLAST on NCBI

transcript from alignment at sc0006021:1246..1468

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044690 ID=TCONS_00044690|Name=TCONS_00044690|organism=Clytia hemisphaerica|type=transcript|length=223bp|location=Sequence derived from alignment at sc0006021:1246..1468 (Clytia hemisphaerica)
TGTTAATTTCATTCACAAATAGAACCAAGATGTGTCTCAGTGGTCAGCTT
GTCAGAAAATTGTTTCCGTATAAAAagcattcaatttttaaattccaaat
tatcacTTTTCATCATTTCGACACCATCTATTGCACCACCAAAAATGTTG
TATAAATACCATACTTTTCATCTTAATTTTTGAGGATTTCTGTAGCCATT
TCAAAGTTACATTCTCTGGGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028305XLOC_028305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044690-exon-sc0006021-1491911889:1246..1468TCONS_00044690-exon-sc0006021-1491911889:1246..1468Clytia hemisphaericaexon
TCONS_00044690-exon-sc0006021-1510915933:1246..1468TCONS_00044690-exon-sc0006021-1510915933:1246..1468Clytia hemisphaericaexon
TCONS_00044690-exon-sc0006021-1575043694:1246..1468TCONS_00044690-exon-sc0006021-1575043694:1246..1468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006021supercontigsc0006021:1246..1468 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731052	0	1.22355	0	0	0	0	0	0	3.69624	0	0	1.20672	0	0	0.949049	0	0	1.52052	0	1.29813	0.368593	3.17671	0	0	0	2.34786	0.318031	0	1.33482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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