TCONS_00044685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044685
Unique NameTCONS_00044685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length921

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044685 ID=TCONS_00044685|Name=TCONS_00044685|organism=Clytia hemisphaerica|type=transcript|length=921bp
AAATGGAAAGTAGCGTACATGATTGGTGCAGCAAATGAGATGTACACAGC
TCAACTATCGAATGCTTTCATTGGAATGTCCTTCCCACAAGCAGTAGAat
tatgttttgaaaaattgaatttaatgtTGATTGCCATCGAAAtgaaaatc
tcaagaaaagagCGATACTTTGCTATCAATCCCAATGACAAGAAGTTGAG
ACTTTTACCAGGAACGCGTGGTTTCTTTTTCGCCCAAGATGCCAGCGATG
TTGCGAAGTAAATACACACGTTTATTTTGTTCAATCATACCATACACAAT
ACGCCTTGAGAGGGGGTCTATCTaacaaatcctgcattactaaaaataga
caaaaagaacgacaaatttcataaagaacgataAATATCACCATCCACAA
CCAACCCCGACCAAAAGTGACTATACACCCCTACGTATTCATTCCTCATC
GTTTGTCACGGGAATCAACTTTAAAAGATGTTACAATGGCGGGATTTGCA
AGACAAACCTACTGTTGGGAAGATCTGATCATGctgacccagctggcaca
caacgttaacgtttatctaacgttatatggacgttaggGATGTTTGAtta
acgtttaaacaacgttttAATCAGCTGAGGACACAGACGCATCCCAGCTT
GGACACAACGTTTCTTTCAACGTTTaattaacgttcacaacgtccataaa
acgttggatgaacgttgaaacaacgttgtgtgccagctgggataaaGCCT
TGTTTAAACCTTCATCAATAAAAGACTACTTTTGACATTAAAGGCTAGCT
AGAGGTGATAGTAGAAGCCTTTCTCCAAATCATCATCTTAATATAtatag
actgggaatccagtcgtttataacgtttttgttgaaagcgggaaattttt
atgtcgggatatggttaaaat
Run BLAST on NCBI

transcript from alignment at sc0006010:16..2818-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044685 ID=TCONS_00044685|Name=TCONS_00044685|organism=Clytia hemisphaerica|type=transcript|length=2803bp|location=Sequence derived from alignment at sc0006010:16..2818- (Clytia hemisphaerica)
AAATGGAAAGTAGCGTACATGATTGGTGCAGCAAATGAGATGTACACAGC
TCAACTATCGAATGCTTTCATTGGAATGTCCTTCCCACAAGCAGTAGAGT
AAGTCATAGAATTCGTACCTAGTGTATTATTGGTTTTACTGTGTTCTAGA
CCCAGGGGGGTACCTAGGCAAGTGAACTAAACGAGTATGTGCCGCCCTTA
AGGAGGAGGCTTTTTGGAGCCTTGAGTCCCTGTACTGTACACCTTTTCGA
CCGTAGTCGCACGGCTAGGTGCATGCCACTTTATTTGTAATTTACCACCC
TAAACAACTCGATCCAATCCTTTTTTTAGGGTATTTTTCTTTTGTCTTTA
GGTGCGAAAATAAGACTGTGAACGTTATAGGGTGGTAAAACGGACAAAAA
AATGCCCGCGCGGCAATTGGTGGCTACGGTCGAAAAGGTGTATTGGCTTT
ACCGTTTTTTGGAACCTGGCCTGTAAGGATTGAAAAAAGCAGAAAATTAT
ATCTTAGTCCTATTAAGGGTTGGAGAAATAGGAAAATTTTGCCCCTAGAA
ATATCGAGTTTTGGTTAAATTAGTCTCACTAAGGGTCGTAGAATTCACAA
AATTCTTCTTCTTTTTTTATCCCGCCAAAAGGTCCAAGGGTAGAAAGTCG
GGTGGCACATGCCCGTCAGCTCGCAACCCAGCACCCCCTCCCCCTGGGTT
CTAGATGGTATCAAGTACTTATTATTAGTACAATTGGCCAATACGTAGGT
ATACTCTGACATACAGCGACCGTAGCATGAAGGTAATGCATCTAGCTATG
GTGCGCAAGGTTGAGGGTTCTATCCCTAGCCGGGTCATACCAAAGATTCC
CAATTCCCAATGTACTTGATGCCTCTCTGTTTGATGCTCAGCAATTAAAG
AGACGGATCAAGGGTAAGTGGAGAAATCCAGGGAAAGGAGTGACGCCCTA
CCCTACCTTTGGCTAAACAGCTAGAGAAAAAGGAAGCCGTCGGGTCGCCC
TCGACTGCGGTCGCAAACTTACTTACTGACATCCAGCAGTAACCTCATAA
AGCCTGGTATACACGGAGACGGGCTTAGTATAAAGTGTGAAGTGTAATAG
TCGATGGCATTTATAATATTACTTTGTCTATTGCGCACCATACAAAACAT
TATGCATTTGCTTTTTAGATTATGTTTTGAAAAATTGAATTTAATGTTGA
TTGCCATCGAAATGAAAATCTCAAGAAAAGAGCGATAGTAAGTACTCTAA
TGCAATGATTTATTACACGTTTTTTATAAGAACAAAATCCAAAATTTTGG
ATGCTCTCAACTTTTTAAAGCCTAAAATTTTCCTTAACATGTTCTTATTT
TCACTATTTTGTGGGTATTTCGTTCGTTTTCCTTAAGAAACCGGGTGTTT
TTAAAATTGTTCTTAATATGTTCTTATTTTCACTATTTTGTGGGTATTTT
TCCGTTTTCATAAGAAATCGGGTGTTTTAGAGTCCCCAAAGCCTTAAAAT
GTTCTTAACTTGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTAT
ATAGTTTGTTCTTATTAAAAACGTGTACTTCTTTTAAAAATCCTTTGAAA
TTTGAATATTATCAGTTTTGATAAATGTAGTCTGAGTCGCAGACTCCTAT
AGATACATTTCCTATATAGTATTAAGCATAGCCTCGATAAGAAACTTTTT
TGGATGAGCAGAAGCTAGTTTCTGAGACAAATATTTCTTTAAAAAGATTT
TGATAATTTTTTAATACTACTTGATTCCCATTATTATTACTTGACTTTTT
ATGTTCAAGTCTACATATTACCGTTTTTATGGTCAGACCAAAAAAAGGAC
CAAATTTCCCCTGAGAAATGGAAAAGTTCGGCAAACAGGCGCACGAGGAT
ATCAGTTTAGTCTAGCTTAGACGGCCCACTTTTCGCCCTGTATATTTTTA
TTATGAATTAAAGTGGGCAAAAGGTTGGCTGTCTAAACAAGAGCTCAATA
ACATTAACAGTTCACCAGAATTGACTTATGATTATTTTCTCTCTCCTAGC
TTTGCTATCAATCCCAATGACAAGAAGTTGAGACTTTTACCAGGAACGCG
TGGTTTCTTTTTCGCCCAAGATGCCAGCGATGTTGCGAAGTAAATACACA
CGTTTATTTTGTTCAATCATACCATACACAATACGCCTTGAGAGGGGGTC
TATCTAACAAATCCTGCATTACTAAAAATAGACAAAAAGAACGACAAATT
TCATAAAGAACGATAAATATCACCATCCACAACCAACCCCGACCAAAAGT
GACTATACACCCCTACGTATTCATTCCTCATCGTTTGTCACGGGAATCAA
CTTTAAAAGATGTTACAATGGCGGGATTTGCAAGACAAACCTACTGTTGG
GAAGATCTGATCATGCTGACCCAGCTGGCACACAACGTTAACGTTTATCT
AACGTTATATGGACGTTAGGGATGTTTGATTAACGTTTAAACAACGTTTT
AATCAGCTGAGGACACAGACGCATCCCAGCTTGGACACAACGTTTCTTTC
AACGTTTAATTAACGTTCACAACGTCCATAAAACGTTGGATGAACGTTGA
AACAACGTTGTGTGCCAGCTGGGATAAAGCCTTGTTTAAACCTTCATCAA
TAAAAGACTACTTTTGACATTAAAGGCTAGCTAGAGGTGATAGTAGAAGC
CTTTCTCCAAATCATCATCTTAATATATATAGACTGGGAATCCAGTCGTT
TATAACGTTTTTGTTGAAAGCGGGAAATTTTTATGTCGGGATATGGTTAA
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028300XLOC_028300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044685-exon-sc0006010-1575043694:2721..2818TCONS_00044685-exon-sc0006010-1575043694:2721..2818Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1575043694:1582..1650TCONS_00044685-exon-sc0006010-1575043694:1582..1650Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1575043694:16..769TCONS_00044685-exon-sc0006010-1575043694:16..769Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1510915933:2721..2818TCONS_00044685-exon-sc0006010-1510915933:2721..2818Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1510915933:1582..1650TCONS_00044685-exon-sc0006010-1510915933:1582..1650Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1510915933:16..769TCONS_00044685-exon-sc0006010-1510915933:16..769Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1491911889:2721..2818TCONS_00044685-exon-sc0006010-1491911889:2721..2818Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1491911889:1582..1650TCONS_00044685-exon-sc0006010-1491911889:1582..1650Clytia hemisphaericaexon
TCONS_00044685-exon-sc0006010-1491911889:16..769TCONS_00044685-exon-sc0006010-1491911889:16..769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006010supercontigsc0006010:16..2818 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52124	0.317803	0.913186	0.731405	1.21775	0.888888	1.6442	2.25563	1.18139	1.49616	1.40815	1.42004	3.16327	2.23629	0.664121	0.910507	1.04983	1.78348	2.87541	3.65976	1.89912	1.31865	1.3499	1.50258	2.11674	2.36874	0.82437	0.722954	0.822126	0.657962
Blast
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BLAST of TCONS_00044685 vs. Swiss-Prot (Human)
Match: KCMA1 (Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.312e-19
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    4 WKVAYMIGAANEMYTAQLSNAFIGMSFPQAVELCFEKLNLMLIAIEMKISRKERYFAINPNDKKLRLLPGTRGFFFAQDASDVAK 258
            W+  Y+ G +NEMYT  LS+AF+G+SFP   ELCF KL L++IAIE K + +E    INP +  L++  GT GFF A DA +V +
Sbjct:  589 WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGN-HLKIQEGTLGFFIASDAKEVKR 672
The following BLAST results are available for this feature:
BLAST of TCONS_00044685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCMA12.312e-1949.41Calcium-activated potassium channel subunit alpha-... [more]
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