TCONS_00044683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044683
Unique NameTCONS_00044683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044683 ID=TCONS_00044683|Name=TCONS_00044683|organism=Clytia hemisphaerica|type=transcript|length=683bp
ATGGAGAAATCCTATCCGACGACGATTCCTCGTCCAATGGCGCTATGGAA
ATCGACACCATTGACAACACTAAACCCGACGAAAACTCGGAACCACCAAA
AATTCCCTTAAATGACCAAATCATCCAACACTTCCCAAAGGTGCAAGCAA
AGAAGACGACTCCACTTACACAATGTAGTCACAAATCAATCCGTGTTAAC
TTTTCAGAATACGTAAAGAAACGCCGCCAATATTACACAAACACCAAAAC
TCCATACTCGATGAGAGATTGGAAACCCGCCATACATGGATATGAGAACT
TTTTCGGAGATGTCGGTTGGCTATACATGCTCAGTAAATGGGAATGGTTG
ACACTCATGAAACTGCTTGACTTAAAGAGAAGGCTAGGTTATCGCGCCTC
TAGAACCTACGCGATGTTTTTTGAACAAATAGACCAACTGGACAAAAACC
ATCCAAGACCAGATATAGAAAACACAGAACGATTCGAAGATGAACTGAAC
GAACAAATAGAAAAACTTGTAAGAACTGCCTGCATCCGCCAACACTCCAT
GAAGGAGACATCCTTCAAATGGACGCCCAACCGAGATCTTTGGGAATTTT
GGCGGACAAGGACACAATTTTTCTACAACAACTCACttagagaaaaacaa
acaattcaacaaaacaaataatttttttcttNN
Run BLAST on NCBI

protein sequence of TCONS_00044683-protein

>TCONS_00044683-protein ID=TCONS_00044683-protein|Name=TCONS_00044683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
GEILSDDDSSSNGAMEIDTIDNTKPDENSEPPKIPLNDQIIQHFPKVQAK
KTTPLTQCSHKSIRVNFSEYVKKRRQYYTNTKTPYSMRDWKPAIHGYENF
FGDVGWLYMLSKWEWLTLMKLLDLKRRLGYRASRTYAMFFEQIDQLDKNH
PRPDIENTERFEDELNEQIEKLVRTACIRQHSMKETSFKWTPNRDLWEFW
RTRTQFFYNNSLREKQTIQQNK
Run BLAST on NCBI

transcript from alignment at sc0006007:2145..2827

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044683 ID=TCONS_00044683|Name=TCONS_00044683|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at sc0006007:2145..2827 (Clytia hemisphaerica)
NNaagaaaaaaattatttgttttgttgaattgtttgtttttctctaaGTG
AGTTGTTGTAGAAAAATTGTGTCCTTGTCCGCCAAAATTCCCAAAGATCT
CGGTTGGGCGTCCATTTGAAGGATGTCTCCTTCATGGAGTGTTGGCGGAT
GCAGGCAGTTCTTACAAGTTTTTCTATTTGTTCGTTCAGTTCATCTTCGA
ATCGTTCTGTGTTTTCTATATCTGGTCTTGGATGGTTTTTGTCCAGTTGG
TCTATTTGTTCAAAAAACATCGCGTAGGTTCTAGAGGCGCGATAACCTAG
CCTTCTCTTTAAGTCAAGCAGTTTCATGAGTGTCAACCATTCCCATTTAC
TGAGCATGTATAGCCAACCGACATCTCCGAAAAAGTTCTCATATCCATGT
ATGGCGGGTTTCCAATCTCTCATCGAGTATGGAGTTTTGGTGTTTGTGTA
ATATTGGCGGCGTTTCTTTACGTATTCTGAAAAGTTAACACGGATTGATT
TGTGACTACATTGTGTAAGTGGAGTCGTCTTCTTTGCTTGCACCTTTGGG
AAGTGTTGGATGATTTGGTCATTTAAGGGAATTTTTGGTGGTTCCGAGTT
TTCGTCGGGTTTAGTGTTGTCAATGGTGTCGATTTCCATAGCGCCATTGG
ACGAGGAATCGTCGTCGGATAGGATTTCTCCAT

Coding sequence (CDS) from alignment at sc0006007:2145..2827

>TCONS_00044683 ID=TCONS_00044683|Name=TCONS_00044683|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0006007:2145..2827 (Clytia hemisphaerica)
ttatttgttttgttgaattgtttgtttttctctaaGTGAGTTGTTGTAGA
AAAATTGTGTCCTTGTCCGCCAAAATTCCCAAAGATCTCGGTTGGGCGTC
CATTTGAAGGATGTCTCCTTCATGGAGTGTTGGCGGATGCAGGCAGTTCT
TACAAGTTTTTCTATTTGTTCGTTCAGTTCATCTTCGAATCGTTCTGTGT
TTTCTATATCTGGTCTTGGATGGTTTTTGTCCAGTTGGTCTATTTGTTCA
AAAAACATCGCGTAGGTTCTAGAGGCGCGATAACCTAGCCTTCTCTTTAA
GTCAAGCAGTTTCATGAGTGTCAACCATTCCCATTTACTGAGCATGTATA
GCCAACCGACATCTCCGAAAAAGTTCTCATATCCATGTATGGCGGGTTTC
CAATCTCTCATCGAGTATGGAGTTTTGGTGTTTGTGTAATATTGGCGGCG
TTTCTTTACGTATTCTGAAAAGTTAACACGGATTGATTTGTGACTACATT
GTGTAAGTGGAGTCGTCTTCTTTGCTTGCACCTTTGGGAAGTGTTGGATG
ATTTGGTCATTTAAGGGAATTTTTGGTGGTTCCGAGTTTTCGTCGGGTTT
AGTGTTGTCAATGGTGTCGATTTCCATAGCGCCATTGGACGAGGAATCGT
CGTCGGATAGGATTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028298XLOC_028298Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044683-proteinTCONS_00044683-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044683-exon-sc0006007-1491911889:2145..2827TCONS_00044683-exon-sc0006007-1491911889:2145..2827Clytia hemisphaericaexon
TCONS_00044683-exon-sc0006007-1510915933:2145..2827TCONS_00044683-exon-sc0006007-1510915933:2145..2827Clytia hemisphaericaexon
TCONS_00044683-exon-sc0006007-1575043694:2145..2827TCONS_00044683-exon-sc0006007-1575043694:2145..2827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006007supercontigsc0006007:2145..2827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.52963	8.6962	9.99339	10.6622	65.05	45.0698	17.8669	16.833	2.69312	4.59857	2.08611	1.19694	0	0.0639479	0	0.04561	0	0.172772	0	0	0.17836	0	1.59577	1.37263	0	0	0.307893	0.10953	0.966109	0.918709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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