TCONS_00044676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044676
Unique NameTCONS_00044676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044676 ID=TCONS_00044676|Name=TCONS_00044676|organism=Clytia hemisphaerica|type=transcript|length=542bp
ttaaaggTACTAATGGAACAGAATTAACCATTCAATATCCTAATGGTCTA
ACGATAAATGTCCTGTCCTACCTCACGACCACTAGAACTGTGGGCTGGGC
TAGTGCCACAGCAAGCATTCCTTTCATCTGCCAATGGAAACGAGACAGGA
GTAAGTGTGCTTTATTGGGTGGGTATCGGTTCGGTGATCGATGCTTTCGA
CATCTCTCGGTGAAAGATGGAATTAAATATTCGGCTGATGGCTTATGTAC
AGAATGGCATACAGATGCTACACTATTTACGCCACTTGAGACCCCCAAGG
AGATGAGTTTTCTACAAAAATCCTTAAAAGATGTAGGCGTGAGTAAAGTA
TGGATGGGCGCTGAATACAATGTGGACACGTGGGATTGGGCGGATTCTGT
ATCACGTCCTAATTTATTGCAGCCGCCGTCGTTACTTGACTCATGTGCAA
TGCTCGATGTTAATGCGTTTCCAAGCGCTATATACACCACTTCCGAATGT
GTTGATGTGTTTTCAAACCATGATATACTGTGTCAATTGTTA
Run BLAST on NCBI

protein sequence of TCONS_00044676-protein

>TCONS_00044676-protein ID=TCONS_00044676-protein|Name=TCONS_00044676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
KGTNGTELTIQYPNGLTINVLSYLTTTRTVGWASATASIPFICQWKRDRS
KCALLGGYRFGDRCFRHLSVKDGIKYSADGLCTEWHTDATLFTPLETPKE
MSFLQKSLKDVGVSKVWMGAEYNVDTWDWADSVSRPNLLQPPSLLDSCAM
LDVNAFPSAIYTTSECVDVFSNHDILCQLL
Run BLAST on NCBI

transcript from alignment at sc0005998:210..2756-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044676 ID=TCONS_00044676|Name=TCONS_00044676|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at sc0005998:210..2756- (Clytia hemisphaerica)
TTAAAGGTACTAATGGAACAGAATTAACCATTCAATATCCTAATGGTCTA
ACGATAAATGTCCTGTCCTACCTCACGACCACTAGAACTGTGGGCTGGGC
TAGTGCCACAGCAAGCATTCCTTTCATCTGCCAATGGAAACGAGGTGATT
ATGTTTATCTAATCGGGGAAAACTTCGTCGGGGAAAAGTGACGACATTTT
GGACAAGTTATGAATATTTTCCCCGGCGAAATTTTCCCCGATAAGGTATC
AAAGGAGCATGTTTGCAAACATTGCATTTTAAGTCCGAAGGGCTATATAG
TGGAATCTTCAACTTTTTCCCAAGCAAGTGTAGCTTTTTAAGATTTTCGT
GCTTTTAATGACGGATAGAATCTAGTGCTTTCTTTGTTTTGACGTGGCCC
ATATGGCGATAGATTTTACTATTTATCTAGCGTTTGTGTAAAAACATCGC
GGGAGATGCACTCTGGATAGGAACGAGTGGTTTTATTTTTCATCCAATGG
GTTTCAATCCAATCCTTCAGGATGTAATCTCAAAGGGAGCGACGGCCGCC
AAACATTAGGGCTAGCATAGAAATTGATTTGATACGTACGTATTTGGTAC
GGTATTGGGCTATCTAATCTCATAACGTATCNGACGGCCGCCAAACATTA
GGGCTAGCATAGAAATTGATTTGATACGTACGTATTTGGTACGGTATTGG
GCTATCTAATCTCATAACGTATCATCCATTCTGCGCACACCATTCTTTAC
TCTTAAGAAATGTGGCGATTGCAATGAATGGAGTCTATATACGGCGTTTG
TATGTCATTATATGTTTTGCTTGCAACTTGCGATTCGAGGAGGGTCTGGA
ACGCTTTGCAACTTTTATACATATACAGAAACGTGCTAACGCGGAGTAAT
CAAAATCTACTCGGGGAAATTTTCACCAGTGATAGATACTGACCATCTAA
GACAGTTTGCGAAATTTCACTTAGTCAGTCAGACACGTGGGTGGTGGTTT
CGATTTTGCTTTTAAATTTTGGCTGCAAGCTTGTATTATCAATATACCTA
AAGGGCTACTTAAACTACACAATATATTGACGAACAATATTCAACAATAT
AGTTTTCGGACCGTAATGTACGAAGTAAACATCAGGTACTCTATCATAAA
AAGGATTTTCTTTCTTTAAAAATCCCTCTATATTGTTGAAATATTGCAAA
TCGAGCTGATAATATATTGCGGACACCTTAACAATATATTGTCTGCACTC
AGCAATATATCGTCAATAAATTGCCAATATATTGCCTGGCAATATATTGT
GTAGTGTATGTAGCCCTTAACAATTTTTAAAATTTCAAGTCAATAGCCAA
TTTTCCAATCCTCAGATACAGTATCTTAGGGCTGATTTAGACAAAAAGGG
CAATTTTAGGCCTTTCTGTAAAATACACGATACCAACAGATGGCAAATAT
TGATGTCATATGTCACATGGAGTTGCCTCACAAAATTTGAGCAAAAGAAA
TTAAATTGAAAAACGTTAGAGTGGGATCCTATTTTCGGTATTATCAACGA
ATAATGACGTTATCAATGATGCCATACTTGGTGCACACTTTCAAACCAAT
TGGATAAATATTTCAAAAGTTATCTTAAAAAATCGTTCGTTTTCTTTAGG
GAGGGGGGGGGGCCAAGATACTCAACGTGTAACTTATGGCATGTCCAAAA
TGACCAGTAAGTTTGGCCCAGAAAATAGGAGACCTTTGGCATATCTGTAA
AAGGTTATTCTTCAGGTTTATATAAAGAAGCTTTTCCGTTTCAAAATTCT
GAACGCAGTCACCAAAATTTCAAGAATAGATGTAGTCTAGAGCTAGACTA
CTAATTAACATCAGATTTACTCAAAAGCTTCTTTTACAGTAGTAGAAAAA
TCCTACCTAGAAGTTTGTTTACTTTTCGTGTGTTTGAATTAGTATTACTA
TTCCAACTTCCCATACGGCTTTTTTTCTTTTTGATTTTGAGGCAGGATTG
CTCCTACGTTTTGTGTTAAAAGAATAATGGTCTGGAAATCGAGACTAGAA
TAGATGCAAATCTGCTGTGTAAAACCCATTTTCTGTTTCAGAAGAAAAAC
CTTGTTTTGGCCTCTGGATTAATAATGAATTTCTATCATTCATTTTTAGA
CAGGAGTAAGTGTGCTTTATTGGGTGGGTATCGGTTCGGTGATCGATGCT
TTCGACATCTCTCGGTGAAAGATGGAATTAAATATTCGGCTGATGGCTTA
TGTACAGAATGGCATACAGATGCTACACTATTTACGCCACTTGAGACCCC
CAAGGAGATGAGTTTTCTACAAAAATCCTTAAAAGATGTAGGCGTGAGTA
AAGTATGGATGGGCGCTGAATACAATGTGGACACGTGGGATTGGGCGGAT
TCTGTATCACGTCCTAATTTATTGCAGCCGCCGTCGTTACTTGACTCATG
TGCAATGCTCGATGTTAATGCGTTTCCAAGCGCTATATACACCACTTCCG
AATGTGTTGATGTGTTTTCAAACCATGATATACTGTGTCAATTGTTA

Coding sequence (CDS) from alignment at sc0005998:210..2756-

>TCONS_00044676 ID=TCONS_00044676|Name=TCONS_00044676|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0005998:210..2756- (Clytia hemisphaerica)
ACAGGAGTAAGTGTGCTTTATTGGGTGGGTATCGGTTCGGTGATCGATGC
TTTCGACATCTCTCGGTGAAAGATGGAATTAAATATTCGGCTGATGGCTT
ATGTACAGAATGGCATACAGATGCTACACTATTTACGCCACTTGAGACCC
CCAAGGAGATGAGTTTTCTACAAAAATCCTTAAAAGATGTAGGCGTGAGT
AAAGTATGGATGGGCGCTGAATACAATGTGGACACGTGGGATTGGGCGGA
TTCTGTATCACGTCCTAATTTATTGCAGCCGCCGTCGTTACTTGACTCAT
GTGCAATGCTCGATGTTAATGCGTTTCCAAGCGCTATATACACCACTTCC
GAATGTGTTGATGTGTTTTCAAACCATGATATACTGTGTCAATTGTTAAA
AGGTACTAATGGAACAGAATTAACCATTCAATATCCTAATGGTCTAACGA
TAAATGTCCTGTCCTACCTCACGACCACTAGAACTGTGGGCTGGGCTAGT
GCCACAGCAAGCATTCCTTTCATCTGCCAATGGAAACGAGACAGGAGTAA
GTGTGCTTTATTGGGTGGGTATCGGTTCGGTGATCGATGCTTTCGACATC
TCTCGGTGAAAGATGGAATTAAATATTCGGCTGATGGCTTATGTACAGAA
TGGCATACAGATGCTACACTATTTACGCCACTTGAGACCCCCAAGGAGAT
GAGTTTTCTACAAAAATCCTTAAAAGATGTAGGCGTGAGTAAAGTATGGA
TGGGCGCTGAATACAATGTGGACACGTGGGATTGGGCGGATTCTGTATCA
CGTCCTAATTTATTGCAGCCGCCGTCGTTACTTGACTCATGTGCAATGCT
CGATGTTAATGCGTTTCCAAGCGCTATATACACCACTTCCGAATGTGTTG
ATGTGTTTTCAAACCATGATATACTGTGTCAATTGTTAAAAGGTACTAAT
GGAACAGAATTAACCATTCAATATCCTAATGGTCTAACGATAAATGTCCT
GTCCTACCTCACGACCACTAGAACTGTGGGCTGGGCTAGTGCCACAGCAA
GCATTCCTTTCATCTGCCAATGGAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028291XLOC_028291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044676-proteinTCONS_00044676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044676-exon-sc0005998-1575043694:2613..2756TCONS_00044676-exon-sc0005998-1575043694:2613..2756Clytia hemisphaericaexon
TCONS_00044676-exon-sc0005998-1575043694:210..607TCONS_00044676-exon-sc0005998-1575043694:210..607Clytia hemisphaericaexon
TCONS_00044676-exon-sc0005998-1510915933:2613..2756TCONS_00044676-exon-sc0005998-1510915933:2613..2756Clytia hemisphaericaexon
TCONS_00044676-exon-sc0005998-1510915933:210..607TCONS_00044676-exon-sc0005998-1510915933:210..607Clytia hemisphaericaexon
TCONS_00044676-exon-sc0005998-1491911889:2613..2756TCONS_00044676-exon-sc0005998-1491911889:2613..2756Clytia hemisphaericaexon
TCONS_00044676-exon-sc0005998-1491911889:210..607TCONS_00044676-exon-sc0005998-1491911889:210..607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005998supercontigsc0005998:210..2756 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.852318	0.831144	1.2063	0.118017	0.574699	0.454135	0	0.384699	0.808011	0.889646	0.647634	1.4191	2.76339	3.31132	1.27043	1.62306	0.559853	1.06569	4.86993	9.00693	0.618052	0.150732	0.488626	0.777405	1.02948	1.12296	0.292174	0.311816	0.354753	0.722873
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR001304C-type_lectin-like
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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