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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044673 ID=TCONS_00044673|Name=TCONS_00044673|organism=Clytia hemisphaerica|type=transcript|length=2164bp
CCAAACAAATGGAATGGTGCCAGAGATGCTATTATTAACTCTGATGAACT
GAGATATAGCTTTTTTAAGCCTTCATAACACAAGGGGTTCTAAATCAGcg
tttcattattttttaagcTTACGGTATTTCTTTAACccatttaatttttt
gttatattttttagcTTTGTTTTTCATTGTGTTTGTGAGATATTAACTAT
ATAATATAAGTCACATTAATATTTTGCAATTGACTAGAGTGTAATTGAAG
TTATATCAAATCTCAGGTTCAATCGATTTGAGGCTCTATAAAATCTTTAT
TcttacaagcttctgattgcGCGGAAAGGAATTAGACTTATGAGCTAtta
acacacccctgtctcaatgaaCCCGTGAAATTTTCAACACCACCCAGTTA
CTACtatggaaaaaagtgtttttttatcGGGTTTGAATTTAATATCTATG
AAACATGAAACTCATCGGAGTGTCAGAACTTTCAACTCAATTTTCACTGG
AGTAAAATTCACTTTCATATATTAGTGAGTCTGGTTTTACTAGAATTCGT
TAAAATGCTATTTTTCTCCGATCGGGTGAATCTGACCGGGACACTGGTAC
AGGGCTGTATTTACTCTAATTTAGCTAAAGCTCGCATTTTCAATAAAGGG
AATTATAGTAATATAAACTTaaatttctttgtattttataACAGATTATA
TTTTCAAAGATGAATTCTTTACAAACGAGAATATAGAATAAAGTTGAAAT
TACATTTATTCGTTGGGAAATCTTACTAAATAAATTACGAAATATTGGCT
TTAACAAGTGACAAATGCGAGCTCAGCTCAAATTTAACGCCGTGGTAGAA
AACTCTAGCATTGCTAATTAATTTGAGAACTCGAGCATGCATACTAGACA
TTGATTCGGATTaacttaattaaaaaaaaaacactctgAGGCTTCAAAAA
TAGTTGTGCGAAAAAAGGTCGAATTACTAAAAAAAGTTAATATACAAAGT
ATAGCGGCAACCTAGCAAAGTTCGAGTTTATTATCTGTCTTTTGGAAATG
ACAAGCAATTTAGAGTTATTAAAGAATATGAACTTTACCATTTGGAAcat
acatccaacagaaaaaatcgTATTCTACCACGACATCATCTGGCCAAATT
TTGGTCTTCCCCTGATCATCATATTGAAACATCTTGCCCTGGTTGACTGT
CCAACATGCACTTCGAGGATCACTGATTGGAGCACcagcaaaatcaaaat
cagTCACCTGGTCACCTCCATCTTTTTGCGACCAACTGTTGGTTCCATAG
TTATCACATCTGATCCAGTGATAATCCCCTGGCCATCCTCCATTCTCTCC
ATCTGGCAGTGTGAACAATTTAGGCTTAGATATCAACAGCGCAACAAAAT
GACCTTTATGGGGTGCATAATCAGGCACATGTTGCCATAATACGTTCGGT
GAAAGCTCTTTGCCACCAACATAAATGAGACCATCTGCGATTGCACCTTT
CTTGACATTTTCTCTTGTGGGATGGTCAAATCGTATACCATGTGCTCTTC
CTGGTTGAGCAAAGCTGTTAGATGCGATGTTGGTAGAATAAGCATAGCAG
TTGTTGTCCGGTTGAAACTTTGCAGACATGAAGTTACCATCACAATTATG
TTCGGGATCATATTTGGTCGCTACCCCACGAACAGTTGCTGCATACTGAG
CTACATGGTACACTCCATTTGCACCCGACACTTTCACATAGTGAGGAGGT
ATAACATGATCACCGTCTTGCTCAGATTCAATGATTGGCTTATATATCTC
GTGTTCTTGCGGTGCGAGACCTTTGAATTTGAATGGTTTGATTTGCTTAT
TCTTGTTGGCTTTGTTTTCTTCGCTCATCTTTGCTCCCTTGTGTCCTTGT
TGTTTTCTCTTCTTGCTCTCCTTCTGTTGGTTTGTCAGTGTTGGATGAGG
TTAAGTGATTTCATCCAGCCTTTTTATGCATCGTTGAGAACAAAAGATTT
GTTGTGGATATGCACAATTACCTTATTTGGCGAAGTTTCGATCTCAGCAC
TCAATGATCGATGGATCTGTGTGAGTTCAAAACTTATGATGGAGGCTCTT
CATTTCCTTATTAagattataaaaagaaaaatactctCTGTCATAAATTC
CCCTCAAGATTTGC Run BLAST on NCBI protein sequence of TCONS_00044673-protein >TCONS_00044673-protein ID=TCONS_00044673-protein|Name=TCONS_00044673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MSEENKANKNKQIKPFKFKGLAPQEHEIYKPIIESEQDGDHVIPPHYVKV
SGANGVYHVAQYAATVRGVATKYDPEHNCDGNFMSAKFQPDNNCYAYSTN
IASNSFAQPGRAHGIRFDHPTRENVKKGAIADGLIYVGGKELSPNVLWQH
VPDYAPHKGHFVALLISKPKLFTLPDGENGGWPGDYHWIRCDNYGTNSWS
QKDGGDQVTDFDFAGAPISDPRSACWTVNQGKMFQYDDQGKTKIWPDDVV
VEYDFFCWMYVPNGKVHIL Run BLAST on NCBI transcript from alignment at sc0005990:712..2875 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044673 ID=TCONS_00044673|Name=TCONS_00044673|organism=Clytia hemisphaerica|type=transcript|length=2164bp|location=Sequence derived from alignment at sc0005990:712..2875 (Clytia hemisphaerica)
GCAAATCTTGAGGGGAATTTATGACAGagagtatttttctttttataatc
tTAATAAGGAAATGAAGAGCCTCCATCATAAGTTTTGAACTCACACAGAT
CCATCGATCATTGAGTGCTGAGATCGAAACTTCGCCAAATAAGGTAATTG
TGCATATCCACAACAAATCTTTTGTTCTCAACGATGCATAAAAAGGCTGG
ATGAAATCACTTAACCTCATCCAACACTGACAAACCAACAGAAGGAGAGC
AAGAAGAGAAAACAACAAGGACACAAGGGAGCAAAGATGAGCGAAGAAAA
CAAAGCCAACAAGAATAAGCAAATCAAACCATTCAAATTCAAAGGTCTCG
CACCGCAAGAACACGAGATATATAAGCCAATCATTGAATCTGAGCAAGAC
GGTGATCATGTTATACCTCCTCACTATGTGAAAGTGTCGGGTGCAAATGG
AGTGTACCATGTAGCTCAGTATGCAGCAACTGTTCGTGGGGTAGCGACCA
AATATGATCCCGAACATAATTGTGATGGTAACTTCATGTCTGCAAAGTTT
CAACCGGACAACAACTGCTATGCTTATTCTACCAACATCGCATCTAACAG
CTTTGCTCAACCAGGAAGAGCACATGGTATACGATTTGACCATCCCACAA
GAGAAAATGTCAAGAAAGGTGCAATCGCAGATGGTCTCATTTATGTTGGT
GGCAAAGAGCTTTCACCGAACGTATTATGGCAACATGTGCCTGATTATGC
ACCCCATAAAGGTCATTTTGTTGCGCTGTTGATATCTAAGCCTAAATTGT
TCACACTGCCAGATGGAGAGAATGGAGGATGGCCAGGGGATTATCACTGG
ATCAGATGTGATAACTATGGAACCAACAGTTGGTCGCAAAAAGATGGAGG
TGACCAGGTGActgattttgattttgctgGTGCTCCAATCAGTGATCCTC
GAAGTGCATGTTGGACAGTCAACCAGGGCAAGATGTTTCAATATGATGAT
CAGGGGAAGACCAAAATTTGGCCAGATGATGTCGTGGTAGAATAcgattt
tttctgttggatgtatgTTCCAAATGGTAAAGTTCATATTCTTTAATAAC
TCTAAATTGCTTGTCATTTCCAAAAGACAGATAATAAACTCGAACTTTGC
TAGGTTGCCGCTATACTTTGTATATTAACTTTTTTTAGTAATTCGACCTT
TTTTCGCACAACTATTTTTGAAGCCTcagagtgttttttttttaattaag
ttAATCCGAATCAATGTCTAGTATGCATGCTCGAGTTCTCAAATTAATTA
GCAATGCTAGAGTTTTCTACCACGGCGTTAAATTTGAGCTGAGCTCGCAT
TTGTCACTTGTTAAAGCCAATATTTCGTAATTTATTTAGTAAGATTTCCC
AACGAATAAATGTAATTTCAACTTTATTCTATATTCTCGTTTGTAAAGAA
TTCATCTTTGAAAATATAATCTGTtataaaatacaaagaaatttAAGTTT
ATATTACTATAATTCCCTTTATTGAAAATGCGAGCTTTAGCTAAATTAGA
GTAAATACAGCCCTGTACCAGTGTCCCGGTCAGATTCACCCGATCGGAGA
AAAATAGCATTTTAACGAATTCTAGTAAAACCAGACTCACTAATATATGA
AAGTGAATTTTACTCCAGTGAAAATTGAGTTGAAAGTTCTGACACTCCGA
TGAGTTTCATGTTTCATAGATATTAAATTCAAACCCgataaaaaaacact
tttttccataGTAGTAACTGGGTGGTGTTGAAAATTTCACGGGttcattg
agacaggggtgtgttaaTAGCTCATAAGTCTAATTCCTTTCCGCgcaatc
agaagcttgtaagAATAAAGATTTTATAGAGCCTCAAATCGATTGAACCT
GAGATTTGATATAACTTCAATTACACTCTAGTCAATTGCAAAATATTAAT
GTGACTTATATTATATAGTTAATATCTCACAAACACAATGAAAAACAAAg
ctaaaaaatataacaaaaaattaaatggGTTAAAGAAATACCGTAAgctt
aaaaaataatgaaacgCTGATTTAGAACCCCTTGTGTTATGAAGGCTTAA
AAAAGCTATATCTCAGTTCATCAGAGTTAATAATAGCATCTCTGGCACCA
TTCCATTTGTTTGG Coding sequence (CDS) from alignment at sc0005990:712..2875 >TCONS_00044673 ID=TCONS_00044673|Name=TCONS_00044673|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0005990:712..2875 (Clytia hemisphaerica)
ATGAGCGAAGAAAACAAAGCCAACAAGAATAAGCAAATCAAACCATTCAA
ATTCAAAGGTCTCGCACCGCAAGAACACGAGATATATAAGCCAATCATTG
AATCTGAGCAAGACGGTGATCATGTTATACCTCCTCACTATGTGAAAGTG
TCGGGTGCAAATGGAGTGTACCATGTAGCTCAGTATGCAGCAACTGTTCG
TGGGGTAGCGACCAAATATGATCCCGAACATAATTGTGATGGTAACTTCA
TGTCTGCAAAGTTTCAACCGGACAACAACTGCTATGCTTATTCTACCAAC
ATCGCATCTAACAGCTTTGCTCAACCAGGAAGAGCACATGGTATACGATT
TGACCATCCCACAAGAGAAAATGTCAAGAAAGGTGCAATCGCAGATGGTC
TCATTTATGTTGGTGGCAAAGAGCTTTCACCGAACGTATTATGGCAACAT
GTGCCTGATTATGCACCCCATAAAGGTCATTTTGTTGCGCTGTTGATATC
TAAGCCTAAATTGTTCACACTGCCAGATGGAGAGAATGGAGGATGGCCAG
GGGATTATCACTGGATCAGATGTGATAACTATGGAACCAACAGTTGGTCG
CAAAAAGATGGAGGTGACCAGGTGActgattttgattttgctgGTGCTCC
AATCAGTGATCCTCGAAGTGCATGTTGGACAGTCAACCAGGGCAAGATGT
TTCAATATGATGATCAGGGGAAGACCAAAATTTGGCCAGATGATGTCGTG
GTAGAATAcgattttttctgttggatgtatgTTCCAAATGGTAAAGTTCA
TATTCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044673-exon-sc0005990-1491911889:712..2875 | TCONS_00044673-exon-sc0005990-1491911889:712..2875 | Clytia hemisphaerica | exon |
| TCONS_00044673-exon-sc0005990-1510915933:712..2875 | TCONS_00044673-exon-sc0005990-1510915933:712..2875 | Clytia hemisphaerica | exon |
| TCONS_00044673-exon-sc0005990-1575043694:712..2875 | TCONS_00044673-exon-sc0005990-1575043694:712..2875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005990 | supercontig | sc0005990:712..2875 . |
Blast
The following BLAST results are available for this feature:
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