|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044661 ID=TCONS_00044661|Name=TCONS_00044661|organism=Clytia hemisphaerica|type=transcript|length=924bp
TGATAATGGAAGAACTGTTTATCTCaaaacaagatttttttctctgaTCG
ATCAAGAcatggttttcttgaaataggctttttttttcttgtattaCATT
AAGAATTTCGCCAGAAAAATTGCTCAGCCGACGCACCAATAACAAAAGAA
GTAAATTTATAACACAATAGAATAAGGTCACTAGTTTTACGTATATATAT
TTACAGTTAAAATGGTACAGTTTAAAAATGTTCTGTATCCCAAAAGCAAT
CTAACAAATACAGTATACTATGGTATGGTATGGTATGGTATATAGTGGTA
TATGGTCACTAGTTTTACGTATATATAGTTAAAATGGTACAGTTTAAAAA
TGTTCTGTATCCCAAAAGCAATCTAACAAATACAGTATACTATGGTATAC
ATAGTACTGAGTgttgaaacaaaaaataatatcagATCATTGATGCCATA
AAAGAACCATTCCAGAATGTTCATATGGAATCAGAATTCATACAGCTCAC
CCAACGATTACAAATATTGTAATTGCTCTGTTTAAGGGgaattataccat
atttACGGTCAATGGTCACTCAAATCTTTTACTTTAGGAGATTGTAAAAA
AATGTTGCTTACAGGGCTCGAGCCTTAACAAGTTAACATGGTTGCTTAGA
AAAAAGTGCGTGTTGTTCTCAACGAAGGTATAAAACAATCTGGTCTCAGA
GaaataaaaatggtcaaatagCCCCTTAAGTTAATCCAATCTGCAGACTA
ActcttggaaatttttttaccaattttatcCGACTGTGAAGCAATAAAAT
TTAATTGTCTagcagaaaaaagaaaaatttcaatcacatgacacgagata
cacgctttttttaaaagaacaattttataagaacatgaggctgaaatttg
gccaaaacctaagaacaaattaag Run BLAST on NCBI transcript from alignment at sc0005957:25..1104+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044661 ID=TCONS_00044661|Name=TCONS_00044661|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0005957:25..1104+ (Clytia hemisphaerica)
TGATAATGGAAGAACTGTTTATCTCaaaacaagatttttttctctgaTCG
ATCAAGAcatggttttcttgaaataggctttttttttcttgtattaCATT
AAGAATTTCGCCAGAAAAATTGCTCAGCCGACGCACCAATAACAAAAGAA
GTAAATTTATAACACAATAGAATAAGGTCACTAGTTTTACGTATATATAT
TTACAGTTAAAATGGTACAGTTTAAAAATGTTCTGTATCCCAAAAGCAAT
CTAACAAATACAGTATACTATGGTATGGTATGGTATGGTATATAGTGGTA
TATGGTCACTAGTTTTACGTATATATAGTTAAAATGGTACAGTTTAAAAA
TGTTCTGTATCCCAAAAGCAATCTAACAAATACAGTATACTATGGTATAC
ATAGTACTGAGTgttgaaacaaaaaataatatcagATCATTGATGCCATA
AAAGAACCATTCCAGAATGTTCATATGGAATCAGAATTCATACAGCTCAC
CCAACGATTACAAATATTGTAATTGCTCTGTTTAAGGGgaattataccat
atttatggtTACACGGTCAATGGTCACTCAAATCTTTTACTTTAGGAGAT
TGTAAAAAAATGTTGCTTACAGGGCTCGAGCCTTAACAAGTTAACATGAT
TGCTTAGAAAAAAGTGCGTGTNACTCTGTTTAAGGGtaattataccatat
ttatggtTACACGGTCAATGGTCACTCAAATCTTTTACTTTAGGAGATTG
TAAAAAAATGTTGCTTACAGGGCTCGAGCCTTAACAAGTTAACATGGTTG
CTTAGAAAAAAGTGCGTGTTGTTCTCAACGAAGGTATAAAACAATCTGGT
CTCAGAGaaataaaaatggtcaaatagCCCCTTAAGTTAATCCAATCTGC
AGACTAActcttggaaatttttttaccaattttatcCGACTGTGAAGCAA
TAAAATTTAATTGTCTagcagaaaaaagaaaaatttcaatcacatgacac
gagatacacgctttttttaaaagaacaattttataagaacatgaggctga
aatttggccaaaacctaagaacaaattaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044661-exon-sc0005957-1491911889:25..578 | TCONS_00044661-exon-sc0005957-1491911889:25..578 | Clytia hemisphaerica | exon |
| TCONS_00044661-exon-sc0005957-1510915933:25..578 | TCONS_00044661-exon-sc0005957-1510915933:25..578 | Clytia hemisphaerica | exon |
| TCONS_00044661-exon-sc0005957-1575043694:25..578 | TCONS_00044661-exon-sc0005957-1575043694:25..578 | Clytia hemisphaerica | exon |
| TCONS_00044661-exon-sc0005957-1491911889:735..1104 | TCONS_00044661-exon-sc0005957-1491911889:735..1104 | Clytia hemisphaerica | exon |
| TCONS_00044661-exon-sc0005957-1510915933:735..1104 | TCONS_00044661-exon-sc0005957-1510915933:735..1104 | Clytia hemisphaerica | exon |
| TCONS_00044661-exon-sc0005957-1575043694:735..1104 | TCONS_00044661-exon-sc0005957-1575043694:735..1104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005957 | supercontig | sc0005957:25..1104 + |
Blast
The following BLAST results are available for this feature:
|
