TCONS_00044626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044626
Unique NameTCONS_00044626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044626 ID=TCONS_00044626|Name=TCONS_00044626|organism=Clytia hemisphaerica|type=transcript|length=530bp
ACCTTCAACGGGAACACCACCTTCAACGGAAACACCACCTTCAACGGAAA
CACGACCTTCAACTGGACCACCACCTTCAACGAAAACACCACCTTCAACT
GGACCACCACCTTCAACGGAAACACCACCTTCAACTAGACCACCACCTTC
AACGGGAACACCACCTTCGGCTGGACCATCACCTTCGGCTGGACCATCAC
CTTCAACGGAAACACCACCTTCAACTGGACCACCACCTTCAACTGGACCA
TCACCTTCAGAAGCTGAAGCAGCTGACCTCTTAAAGTTTGTTACTTCATC
ATATGAAACGGAGAAGCCAAGTTTAGCCAGGTGGTTTATGAACCATTTGG
ATTCGAAAGATCTATCAACATCTACTCCAATGCCAAAAGGAATTGGTGCC
AACATTGACCTTGGTTTAGCTGATTGTGATATACATTGGCCAATGCTGAC
TTGCTTTAATTCTGATGGGATGAGCTCCTTTAATAGCCCAAGTAAGCTCT
CTGGGATCCATTTCTTCAAGTATTCCATGT
Run BLAST on NCBI

protein sequence of TCONS_00044626-protein

>TCONS_00044626-protein ID=TCONS_00044626-protein|Name=TCONS_00044626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MEYLKKWIPESLLGLLKELIPSELKQVSIGQCISQSAKPRSMLAPIPFGI
GVDVDRSFESKWFINHLAKLGFSVSYDEVTNFKRSAASASEGDGPVEGGG
PVEGGVSVEGDGPAEGDGPAEGGVPVEGGGLVEGGVSVEGGGPVEGGVFV
EGGGPVEGRVSVEGGVSVEGGVPVEG
Run BLAST on NCBI

transcript from alignment at sc0005903:2440..2969

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044626 ID=TCONS_00044626|Name=TCONS_00044626|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at sc0005903:2440..2969 (Clytia hemisphaerica)
ACATGGAATACTTGAAGAAATGGATCCCAGAGAGCTTACTTGGGCTATTA
AAGGAGCTCATCCCATCAGAATTAAAGCAAGTCAGCATTGGCCAATGTAT
ATCACAATCAGCTAAACCAAGGTCAATGTTGGCACCAATTCCTTTTGGCA
TTGGAGTAGATGTTGATAGATCTTTCGAATCCAAATGGTTCATAAACCAC
CTGGCTAAACTTGGCTTCTCCGTTTCATATGATGAAGTAACAAACTTTAA
GAGGTCAGCTGCTTCAGCTTCTGAAGGTGATGGTCCAGTTGAAGGTGGTG
GTCCAGTTGAAGGTGGTGTTTCCGTTGAAGGTGATGGTCCAGCCGAAGGT
GATGGTCCAGCCGAAGGTGGTGTTCCCGTTGAAGGTGGTGGTCTAGTTGA
AGGTGGTGTTTCCGTTGAAGGTGGTGGTCCAGTTGAAGGTGGTGTTTTCG
TTGAAGGTGGTGGTCCAGTTGAAGGTCGTGTTTCCGTTGAAGGTGGTGTT
TCCGTTGAAGGTGGTGTTCCCGTTGAAGGT

Coding sequence (CDS) from alignment at sc0005903:2440..2969

>TCONS_00044626 ID=TCONS_00044626|Name=TCONS_00044626|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0005903:2440..2969 (Clytia hemisphaerica)
ATGGAATACTTGAAGAAATGGATCCCAGAGAGCTTACTTGGGCTATTAAA
GGAGCTCATCCCATCAGAATTAAAGCAAGTCAGCATTGGCCAATGTATAT
CACAATCAGCTAAACCAAGGTCAATGTTGGCACCAATTCCTTTTGGCATT
GGAGTAGATGTTGATAGATCTTTCGAATCCAAATGGTTCATAAACCACCT
GGCTAAACTTGGCTTCTCCGTTTCATATGATGAAGTAACAAACTTTAAGA
GGTCAGCTGCTTCAGCTTCTGAAGGTGATGGTCCAGTTGAAGGTGGTGGT
CCAGTTGAAGGTGGTGTTTCCGTTGAAGGTGATGGTCCAGCCGAAGGTGA
TGGTCCAGCCGAAGGTGGTGTTCCCGTTGAAGGTGGTGGTCTAGTTGAAG
GTGGTGTTTCCGTTGAAGGTGGTGGTCCAGTTGAAGGTGGTGTTTTCGTT
GAAGGTGGTGGTCCAGTTGAAGGTCGTGTTTCCGTTGAAGGTGGTGTTTC
CGTTGAAGGTGGTGTTCCCGTTGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028243XLOC_028243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044626-exon-sc0005903-1491911889:2440..2969TCONS_00044626-exon-sc0005903-1491911889:2440..2969Clytia hemisphaericaexon
TCONS_00044626-exon-sc0005903-1510915933:2440..2969TCONS_00044626-exon-sc0005903-1510915933:2440..2969Clytia hemisphaericaexon
TCONS_00044626-exon-sc0005903-1575043694:2440..2969TCONS_00044626-exon-sc0005903-1575043694:2440..2969Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044626-proteinTCONS_00044626-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005903supercontigsc0005903:2440..2969 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.52083	7.0055	2.25251	2.81587	11.9237	6.59557	50.0172	55.0731	25.8916	32.9938	34.3761	24.3641	16.1711	17.7099	15.6896	27.2091	17.3405	15.0522	15.0385	11.3107	13.7849	17.5131	10.7715	10.5993	26.4619	18.2155	14.8517	7.92509	7.85097	7.37398
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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