TCONS_00044620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044620
Unique NameTCONS_00044620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044620 ID=TCONS_00044620|Name=TCONS_00044620|organism=Clytia hemisphaerica|type=transcript|length=352bp
TAGAACTTCACAAATTTTAACAGAAGCCAGATCTTCATAACCTCTATCAA
ATATGGCGATGTTTTCAAACTTGGTTGTCTTTGCATTATGTTGGTTTGCT
GTCAGTGCTGATTTTGTGGATTTTGTTGACAATGCAATGGAAGACTTCGG
TGACTCACCGGATTTGAAGCGACATAAAATCGTGATGCCAGGAGTTTCAC
CACAGAAGCCAGATACAGTGTTGAGTTATGCGATGAAAATGCCAGATCAA
GATCTCTATATCATCAGATTTGAGCCAATAGGAAACATGAGAGTAGCACA
CCACATGATGATCTTCAGTTGCGAAGAACCTTTCTTGAAAGacaaaattt
gg
Run BLAST on NCBI

protein sequence of TCONS_00044620-protein

>TCONS_00044620-protein ID=TCONS_00044620-protein|Name=TCONS_00044620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MAMFSNLVVFALCWFAVSADFVDFVDNAMEDFGDSPDLKRHKIVMPGVSP
QKPDTVLSYAMKMPDQDLYIIRFEPIGNMRVAHHMMIFSCEEPFLKDKIW
Run BLAST on NCBI

transcript from alignment at sc0005889:2000..3207+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044620 ID=TCONS_00044620|Name=TCONS_00044620|organism=Clytia hemisphaerica|type=transcript|length=1208bp|location=Sequence derived from alignment at sc0005889:2000..3207+ (Clytia hemisphaerica)
TAGAACTTCACAAATTTTAACAGAAGCCAGATCTTCATAACCTCTATCAA
ATATGGCGATGTTTTCAAACTTGGTTGTCTTTGCATTATGTTGGTTTGCT
GTCAGTGCTGATTTTGTGGATTTTGTTGACAATGCAATGGAAGACTTCGG
TGACTCACCGGATTTGAAGCGACATAAAATCGTGATGCCAGGAGTTTCAC
CACAGAAGGTTTGTTGTCTATGTTGATAATATTTAGTAGTAAATTCTCTT
CAGCTCCAATTCAAAAGCTACAAGTCAGACATTTATCACGTCGTTTAAAT
CAATTGCCATTCGAATGGGTTCCAATCTCCCAAGGAGGTTGCAAGATATC
AGAAACCCCGAAGTTTTAATTTGAGAACATTCTAGTAAAagatatgaaat
tttcaaaatttctaatgTATTTTGAATCAGCTCATCGCGAGCGTTTTTTT
GGGATATGGACATGATACGTATGGATGTTAACACTTTAGAAGTTACCTAA
AGATTTGTTATAGGTTcgaacatacccgtcacctGGCAAACCTAATAGCC
CTTGAGCTATAAACCAAATAAGATAGAAATAAGACATGTTATCACTTCCA
AAAATGTTATCGGAGTACCAAGATACCAAAGTTGCTTAACAGAATCTTAC
CATCTtactttttctctattttttagCCAGATACAGTGTTGAGTTATGCG
ATGAAAATGCCAGATCAAGATCTCTATATCAGTAAGTAATGCATACCTTT
ACAGTGTggcatttttctcaaattttcaaccctttaaaaggaaaaaaata
agaattttcggGCAAAATTGTGCAATCTTTCATGGATTTGCTGTGCATTT
ATACTatcttgaaaaacatacccttaactaCCACatatacccgtcggtca
atttgcctgaatACCACCCCCAGGTTAAATCTTGACGGTTGATCCAAAGA
TATAAACTTGAAAATTATCACTCGCCACCACTCGCACCCGATCCAAAGAG
ATCTCAGTCAACTTGGATGAAAAGTAACTTGTtttaaaatatcaacaaaa
cattgataaagcaAATATAACAATTCTTTTTCTACTGACCCTTAATGCGA
AAATTTCCTCCATTTTCAGTCAGATTTGAGCCAATAGGAAACATGAGAGT
AGCACACCACATGATGATCTTCAGTTGCGAAGAACCTTTCTTGAAAGaca
aaatttgg

Coding sequence (CDS) from alignment at sc0005889:2000..3207+

>TCONS_00044620 ID=TCONS_00044620|Name=TCONS_00044620|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0005889:2000..3207+ (Clytia hemisphaerica)
ATGGCGATGTTTTCAAACTTGGTTGTCTTTGCATTATGTTGGTTTGCTGT
CAGTGCTGATTTTGTGGATTTTGTTGACAATGCAATGGAAGACTTCGGTG
ACTCACCGGATTTGAAGCGACATAAAATCGTGATGCCAGGAGTTTCACCA
CAGAAGCCAGATACAGTGTTGAGTTATGCGATGAAAATGCCAGATCAAGA
TCTCTATATCATCAGATTTGAGCCAATAGGAAACATGAGAGTAGCACACC
ACATGATGATCTTCAGTTGCGAAGAACCTTTCTTGAAAGacaaaatttgg
ATGGCGATGTTTTCAAACTTGGTTGTCTTTGCATTATGTTGGTTTGCTGT
CAGTGCTGATTTTGTGGATTTTGTTGACAATGCAATGGAAGACTTCGGTG
ACTCACCGGATTTGAAGCGACATAAAATCGTGATGCCAGGAGTTTCACCA
CAGAAGCCAGATACAGTGTTGAGTTATGCGATGAAAATGCCAGATCAAGA
TCTCTATATCATCAGATTTGAGCCAATAGGAAACATGAGAGTAGCACACC
ACATGATGATCTTCAGTTGCGAAGAACCTTTCTTGAAAGacaaaatttgg
ATGGCGATGTTTTCAAACTTGGTTGTCTTTGCATTATGTTGGTTTGCTGT
CAGTGCTGATTTTGTGGATTTTGTTGACAATGCAATGGAAGACTTCGGTG
ACTCACCGGATTTGAAGCGACATAAAATCGTGATGCCAGGAGTTTCACCA
CAGAAGCCAGATACAGTGTTGAGTTATGCGATGAAAATGCCAGATCAAGA
TCTCTATATCATCAGATTTGAGCCAATAGGAAACATGAGAGTAGCACACC
ACATGATGATCTTCAGTTGCGAAGAACCTTTCTTGAAAGacaaaatttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028238XLOC_028238Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044620-proteinTCONS_00044620-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044620-exon-sc0005889-1491911889:2000..2207TCONS_00044620-exon-sc0005889-1491911889:2000..2207Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1510915933:2000..2207TCONS_00044620-exon-sc0005889-1510915933:2000..2207Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1575043694:2000..2207TCONS_00044620-exon-sc0005889-1575043694:2000..2207Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1491911889:2676..2730TCONS_00044620-exon-sc0005889-1491911889:2676..2730Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1510915933:2676..2730TCONS_00044620-exon-sc0005889-1510915933:2676..2730Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1575043694:2676..2730TCONS_00044620-exon-sc0005889-1575043694:2676..2730Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1491911889:3119..3207TCONS_00044620-exon-sc0005889-1491911889:3119..3207Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1510915933:3119..3207TCONS_00044620-exon-sc0005889-1510915933:3119..3207Clytia hemisphaericaexon
TCONS_00044620-exon-sc0005889-1575043694:3119..3207TCONS_00044620-exon-sc0005889-1575043694:3119..3207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005889supercontigsc0005889:2000..3207 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87237	3.47825	1.70828	1.08425	0	0	0	0	4.35064	1.45689	2.14499	6.87938	5.59626	3.85481	4.46701	2.94533	1.84268	0.475652	1.65417	10.2656	1.96151	2.59056	3.14451	1.36778	0	0	0.434255	0	0.894623	1.37137
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000323Cu2_ascorb_mOase_N
IPR020611Cu2_ascorb_mOase_CS-1
IPR008977PHM/PNGase_F_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005507copper ion binding
GO:0016715oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
GO:0004497monooxygenase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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