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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044599 ID=TCONS_00044599|Name=TCONS_00044599|organism=Clytia hemisphaerica|type=transcript|length=622bp
ATAGGTCTTTTTTCAGCTACTAATTGAAATACTCCACGTCCCGGATGAGC
CCCAAGCAAAGCCAGaagTGATAAGTAAATATACAACTTCAATACCGTTC
AATCCACATGGCATTTGGCGAAAGAATAGAACTGACAATCAGTATGGCCC
TAACTTGGAATACAGCCTTAAAGTGAAATGTGATAAAGATTACGGTGGAA
GTGCCTGTGCTTTTTTCTGTGTACCACGTGATAAATGGGATGGACATTTT
GATTGTGATGAAAACAAGAGGCTAGTTTGTCATGCTGGATATACTGGACA
ATTTTGCAATATTCCAATGTGTGATCCAACTTGTGAAAATGGCCATTGTT
TGTCTCCGTACAAGTTTGTAGTCGAGGTTGGAAAGGATATACATGTGGTG
AGTGTGTTGTGGGGCCTGGTTGCCTTCATGGTACATGTGACGAGCCTTAT
GAATGCAATTGCTCTGAGGGATGGTCAGGTGGGACTTGTGATACATGCGT
CAAAGCACCTGGCTGTGTTCATGGGGCATGTAACCTACCAGATGAGTGCA
ATTGCGACATTGGTTGGACAGGAGAAAACTGTGATCAGAGTATGTCATTA
GTTATCAATATTCACTTTGAGG Run BLAST on NCBI transcript from alignment at sc0005862:291..2750+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044599 ID=TCONS_00044599|Name=TCONS_00044599|organism=Clytia hemisphaerica|type=transcript|length=2460bp|location=Sequence derived from alignment at sc0005862:291..2750+ (Clytia hemisphaerica)
ATAGGTCTTTTTTCAGCTACTAATTGAAATACTCCACGTCCCGGATGAGC
CCCAAGCAAAGCCAGGTAAATAGGCTCGTTGATTTGACTTATTAAAAATC
TATTGATGGGAATTTCTCTTTTGAAATCCATGCAGCAATATTGAATGAGA
AGCGGTTCCTTTGATTAAAAGTAAATGAatcttttgaatgaatattGACG
TCACCAAAAACTAATGTAAAGAGTTATGAGTACCTGTTATATTTGTGACT
AAAACAAGACTATTGATTCTTTTGTGTTCCCAATTCATTATTATGCAATC
AATGTCCACTTTGgttttattaaatatttattttaccgAACACGCGCGTG
CtcaaaacgaaagcgaaaacgaaagcaTTTATTTTGATTTCCGAGAAATT
CGTTTGTTTGAGGGGAAATCTGAAATGTACAAAACTTAGAACTCTCTAGT
GAAGCTAgagtaattttatttttcaatttttcagaagTGATAAGTAAATA
TACAACTTCAATACCGTTCAATCCACATGGCATTTGGCGAAAGAATAGAA
CTGACAATCAGTATGGCCCTAACTTGGAATACAGCCTTAAAGTGAAATGT
GATAAAGATTACGGTGGAAGTGCCTGTGCTTTTTTCTGTGTACCACGTGA
TAAATGGGATGGACATTTTGATTGTGATGAAAACAAGAGGCTAGTTTGTC
ATGCTGGATATACTGGACAATTTTGCAATATTCGTAAGACTTATTCTTTA
ACAGTGAagctagcctgggaatccaagctcataatcttagaaaaaacaac
aaatgcctcacctcacaaagttctaagattgtagagcttggtgcaggtag
attagtctgacacagaatgttatgaACAGTTTGTGTGTGAACCGTTGCTG
ACACACTTTcagaactttggaaacccaggcaaacacacataatcaactta
ccataaaaaNAAAAACTCCTCCACAacctctaaagactttcaaaactata
ctaaaaaccacatcaaaacatcagccacatgtatttagacttccagccaa
cagccattttgtttcaaaatgaatctatgttttcattttcatttgtttta
cttttttctgcagagacagctttttccataaactatgcgtgcgcatcgaa
attatcaaaatttgcgcgaaagtactgctaagtaatacgccgaaagctgg
ccaatcaggctgaacctgcattgcagggaaaaatctccctgcaggcgagt
tacctgtgCCAAGcattaaacaagcagcaaaaatatcataaactagactg
tgaacaaagtttaacgcttggattcccaggctacagtgaagcttgaattt
tgaaactgtaaactattttctcattttgatatTTCTGCTGTTTACTGTGT
CTGGTTTGGAAACCCAGTGTCTGCAAATTCTCGGCTAGGTCTGATGATTG
AAAATGTGACAAAATATCCATTATACATCTGCTTTCTGCTTTTTGATGGC
AAATCAATTTAGAAATACCAGAAACATAAATTCAAAATAGCATATAGCCA
CTGGATATCCATGCTTACAAAGGCTACAGTATTACTTAACTAGATATGAC
AATCAAAGAATGGGACCCGTGTGGAATtcctttttgaattatttccaaaa
tttgcaaaaaagtgaccctgaatggctAAAAcctttatcattgttttgta
ATGTTAATTGGGACTGGTGGAgtttaaaaaaggtaccctttccaGCAGCA
CATCCTCATACTTCTTTTTGCCTTAGTGTTCCCTAGGCttaaattttctt
gatttattcCTCCTTATTTATTCAGAAAATAAATGTACTTGAATAAGCAG
GAATAAGAACTGGTTATACTTTTAAGGAAGTAATTCTTAATCTTACTAGT
TTCAATCTGGGTCTCGAACAAAACTTCATTTGCAAAATTCTTTTGATAAT
ATGCTTTGTTATAATGAAGTTTCTTTCTTTTAGTATTAGcatattttaaa
ttattatttcatttataatTTTATGCAGCAATGTGTGATCCAACTTGTGA
AAATGGCCATTGTTTGTCTCCGTACAAGTGTAGGTTAGTTGATTCAtgtt
ttacaaaaattgaaaatttaaggATCAAGCTCGTACCAATTTCTCCTCAT
AATTAGAGTGACAGGTTCTGAATATTTATTGATGtcaaatttatttcttt
tagTTGTAGTCGAGGTTGGAAAGGATATACATGTGGTGAGTGTGTTGTGG
GGCCTGGTTGCCTTCATGGTACATGTGACGAGCCTTATGAATGCAATTGC
TCTGAGGGATGGTCAGGTGGGACTTGTGATACATGCGTCAAAGCACCTGG
CTGTGTTCATGGGGCATGTAACCTACCAGATGAGTGCAATTGCGACATTG
GTTGGACAGGAGAAAACTGTGATCAGAGTATGTCATTAGTTATCAATATT
CACTTTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044599-exon-sc0005862-1491911889:291..355 | TCONS_00044599-exon-sc0005862-1491911889:291..355 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1510915933:291..355 | TCONS_00044599-exon-sc0005862-1510915933:291..355 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1575043694:291..355 | TCONS_00044599-exon-sc0005862-1575043694:291..355 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1491911889:775..1023 | TCONS_00044599-exon-sc0005862-1491911889:775..1023 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1510915933:775..1023 | TCONS_00044599-exon-sc0005862-1510915933:775..1023 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1575043694:775..1023 | TCONS_00044599-exon-sc0005862-1575043694:775..1023 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1491911889:2319..2369 | TCONS_00044599-exon-sc0005862-1491911889:2319..2369 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1510915933:2319..2369 | TCONS_00044599-exon-sc0005862-1510915933:2319..2369 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1575043694:2319..2369 | TCONS_00044599-exon-sc0005862-1575043694:2319..2369 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1491911889:2494..2750 | TCONS_00044599-exon-sc0005862-1491911889:2494..2750 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1510915933:2494..2750 | TCONS_00044599-exon-sc0005862-1510915933:2494..2750 | Clytia hemisphaerica | exon |
| TCONS_00044599-exon-sc0005862-1575043694:2494..2750 | TCONS_00044599-exon-sc0005862-1575043694:2494..2750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005862 | supercontig | sc0005862:291..2750 + |
Blast
BLAST of TCONS_00044599 vs. Swiss-Prot (Human)
Match: DLL4 (Delta-like protein 4 OS=Homo sapiens GN=DLL4 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 8.264e-21 Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 2
Query: 11 FQLLIEILHVPDE---PQAKP--EVISKYTTSIPFNPHGIWRKNRTDNQYGPNLEYSLKVKCDKDYGGSACAFFCVPRDKWDGHFDCDENKRLVCHAGYTGQFCNIPMCDPTC--ENGHCLSP 358
F L+IE H P + P+A P +ISK W + + L YS +V C +Y G C+ C R+ GH+ C + L C G+TG++C P+C C +NG+C P
Sbjct: 115 FSLIIEAWHAPGDDLRPEALPPDALISKIAIQGSLAVGQNWLLDEQTSTL-TRLRYSYRVICSDNYYGDNCSRLCKKRNDHFGHYVCQPDGNLSCLPGWTGEYCQQPICLSGCHEQNGYCSKP 236 HSP 2 Score: 55.8398 bits (133), Expect = 8.264e-21 Identity = 33/87 (37.93%), Postives = 43/87 (49.43%), Query Frame = 1
Query: 364 VCSRGWKGYTCGECVVGPGCLHGTCDEPYECNCSEGWSGGTCDT----CVKAPGCVHGAC-----NLPDECNCDIGWTGENCDQSMS 597
+C GW+G C EC+ GC HGTC P++C C EGW G CD C C +GA C C G+TG +C+ +S
Sbjct: 240 LCRPGWQGRLCNECIPHNGCRHGTCSTPWQCTCDEGWGGLFCDQDLNYCTHHSPCKNGATCSNSGQRSYTCTCRPGYTGVDCELELS 326
The following BLAST results are available for this feature:
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