TCONS_00044598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044598
Unique NameTCONS_00044598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044598 ID=TCONS_00044598|Name=TCONS_00044598|organism=Clytia hemisphaerica|type=transcript|length=504bp
TTTCAGAGAACTTTTCGATGAAAGTAATATGGAAACATACTATATGCCAC
CtaattacaaaaacaaaaaaggggaATATAAGGAAGTAATCCAACAGATT
ATAACATCCCAAGATAGATTTTTTCAAATCGAAAACATATCATCACTCTC
TAATATGGGTTCTGACCATCTCCCAGttactttttctgtttttgatcCTC
TTGCTTCTTGTAAAAAGACTAAATACATTAGACTCTATCATAAACTTAAT
CTTGATTCTGTCTCTAATTCTCTCAGTAATTTTTCTAATGAAAAGGTCTT
TGGTGTTCAagaagttgaaaacaaaacttctcTACTTATTTCTTTATTAA
AGGTCATTGAATCTAAAGTTCCAAGAAAACTAATTACATCTAATAACCAA
GGTCTGTCATTAAAGTCAAGAAAACTAATTAAAGAAAGACGAAAAATCAT
TAATCTTCTCAGGAAAAATAAACACTCCATCTTTCTGAGATCGAAAAAGA
ATCA
Run BLAST on NCBI

protein sequence of TCONS_00044598-protein

>TCONS_00044598-protein ID=TCONS_00044598-protein|Name=TCONS_00044598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
FRELFDESNMETYYMPPNYKNKKGEYKEVIQQIITSQDRFFQIENISSLS
NMGSDHLPVTFSVFDPLASCKKTKYIRLYHKLNLDSVSNSLSNFSNEKVF
GVQEVENKTSLLISLLKVIESKVPRKLITSNNQGLSLKSRKLIKERRKII
NLLRKNKHSIFLRSKKN
Run BLAST on NCBI

transcript from alignment at sc0005861:2598..3101

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044598 ID=TCONS_00044598|Name=TCONS_00044598|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at sc0005861:2598..3101 (Clytia hemisphaerica)
TGATTCTTTTTCGATCTCAGAAAGATGGAGTGTTTATTTTTCCTGAGAAG
ATTAATGATTTTTCGTCTTTCTTTAATTAGTTTTCTTGACTTTAATGACA
GACCTTGGTTATTAGATGTAATTAGTTTTCTTGGAACTTTAGATTCAATG
ACCTTTAATAAAGAAATAAGTAgagaagttttgttttcaacttctTGAAC
ACCAAAGACCTTTTCATTAGAAAAATTACTGAGAGAATTAGAGACAGAAT
CAAGATTAAGTTTATGATAGAGTCTAATGTATTTAGTCTTTTTACAAGAA
GCAAGAGgatcaaaaacagaaaaagtaaCTGGGAGATGGTCAGAACCCAT
ATTAGAGAGTGATGATATGTTTTCGATTTGAAAAAATCTATCTTGGGATG
TTATAATCTGTTGGATTACTTCCTTATATtccccttttttgtttttgtaa
ttaGGTGGCATATAGTATGTTTCCATATTACTTTCATCGAAAAGTTCTCT
GAAA

Coding sequence (CDS) from alignment at sc0005861:2598..3101

>TCONS_00044598 ID=TCONS_00044598|Name=TCONS_00044598|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0005861:2598..3101 (Clytia hemisphaerica)
ATTCTTTTTCGATCTCAGAAAGATGGAGTGTTTATTTTTCCTGAGAAGAT
TAATGATTTTTCGTCTTTCTTTAATTAGTTTTCTTGACTTTAATGACAGA
CCTTGGTTATTAGATGTAATTAGTTTTCTTGGAACTTTAGATTCAATGAC
CTTTAATAAAGAAATAAGTAgagaagttttgttttcaacttctTGAACAC
CAAAGACCTTTTCATTAGAAAAATTACTGAGAGAATTAGAGACAGAATCA
AGATTAAGTTTATGATAGAGTCTAATGTATTTAGTCTTTTTACAAGAAGC
AAGAGgatcaaaaacagaaaaagtaaCTGGGAGATGGTCAGAACCCATAT
TAGAGAGTGATGATATGTTTTCGATTTGAAAAAATCTATCTTGGGATGTT
ATAATCTGTTGGATTACTTCCTTATATtccccttttttgtttttgtaatt
aGGTGGCATATAGTATGTTTCCATATTACTTTCATCGAAAAGTTCTCTGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028217XLOC_028217Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044598-proteinTCONS_00044598-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044598-exon-sc0005861-1491911889:2598..3101TCONS_00044598-exon-sc0005861-1491911889:2598..3101Clytia hemisphaericaexon
TCONS_00044598-exon-sc0005861-1510915933:2598..3101TCONS_00044598-exon-sc0005861-1510915933:2598..3101Clytia hemisphaericaexon
TCONS_00044598-exon-sc0005861-1575043694:2598..3101TCONS_00044598-exon-sc0005861-1575043694:2598..3101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005861supercontigsc0005861:2598..3101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.117276	0.136169	0.266439	0	0.128158	0	0	0	0.125531	0.121843	0.0800948	0.319934	0.0830637	1.2975	0.732852	0.180563	0.925355	0.767057	1.204	2.67439	3.06267	0.965243	1.12827	0.258243	1.61333	2.47358	1.23194	0.133483	0.135998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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