TCONS_00044596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044596
Unique NameTCONS_00044596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044596 ID=TCONS_00044596|Name=TCONS_00044596|organism=Clytia hemisphaerica|type=transcript|length=1004bp
GAAATTTTAATTTAGTACCCAAGCCCCGTCGGCTTAACTCTCTGGTGTGA
ACCGCCATTATCAGTGCTACAAGCTCTAACCGCAAACACAAGCAAGCACA
ACAATGATGAATTCAATATCGCAAGAACTTTCTCAGAAGAAACGTGGAGT
AGGAGCCATAAACCGACTAAATGAACCGCCCAATCAAAAAAGGTATACAA
ATTCGTATACTATCGACGCTTTTAATCAGAATCCACCCATCAGCCCCCTT
CCGCCCAAACTACCAGACACGTTGGGTGAACTGCTAGCAGAATACAATCT
TCAAATGTATTTACCGAAGCTGGAAGGTGAAGCGTTGGATGTAGCAACGT
TTTTGGAGTTGTGCGATAACGATTTGAAAGAATTGGGCATTGATAAATTT
GGACCACGTAAAAAGATGTTGTTAGCAATACGAGAATGCAAAGAGCGAAA
GGCTGCTCATGACCCTAATaaaaattgcaaagcaTTGATGGAGACATCAG
AAGAGCTCCAGGAACACCTAATCGGCTGTCAGTTGcagtttcaaaataaa
tctttttcctCCAATCNATGCGAAGCCGATTTTTGTGTGTTCCTGGAGCG
AGTGTAAAAGTACTTTCGAAACGAAAGCTAAGTTTCTGGTGCACCTGAAA
CGCCACTCTGGTTAGTTGcagtttcaaaataaatctttttcctCCAATCT
TGTATCAAGGGTATTTTGATATTTGCCCCTCTATTCGACCTTTTCACAAT
GGGTTGTTCCAGGTTGTTCCTGGAAAATATTAGGATGCTGGTATCCTCTA
AGAATCATGCTTCCTATACTTGAGCTTTCTTAGATGAAAAATTTACGCCT
GCGACGCTGAAAtcacaagaaaaattttatccttCAAAAAAGGTCGAATT
TCTTCCAATCTTGCCCCCCCCCTAAACGAAAATTCGTGACTACGCCTCTG
GGTTTTATTgaggtctgcgaatcagactagTTTAAATTGTCCATATTCTT
AAAA
Run BLAST on NCBI

protein sequence of TCONS_00044596-protein

>TCONS_00044596-protein ID=TCONS_00044596-protein|Name=TCONS_00044596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MMNSISQELSQKKRGVGAINRLNEPPNQKRYTNSYTIDAFNQNPPISPLP
PKLPDTLGELLAEYNLQMYLPKLEGEALDVATFLELCDNDLKELGIDKFG
PRKKMLLAIRECKERKAAHDPNKNCKALMETSEELQEHLIGCQLQFQNKS
FSSNXCEADFCVFLERV
Run BLAST on NCBI

transcript from alignment at sc0005859:1..3228-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044596 ID=TCONS_00044596|Name=TCONS_00044596|organism=Clytia hemisphaerica|type=transcript|length=3228bp|location=Sequence derived from alignment at sc0005859:1..3228- (Clytia hemisphaerica)
GAAATTTTAATTTAGTACCCAAGCCCCGTCGGCTTAACTCTCTGGTGTGA
ACCGCCATTATCAGTGCTACAAGCTCTAACCGCAAACACAAGCAAGCACA
ACAATGATGAATTCAATATCGCAAGAACTTTCTCAGAAGAAACGTGGAGT
AGGAGCCATAAACCGACTAAATGGTAAGTCTTGTGTTATTTTTACAAAGT
CCACTGGTTACTGGATTGGAGAGATATGGTTGGAGGTTTTTTGTCAGCTT
GTCTTTTTTGCACGTGTGCACCACTGTAATTATAGACAGATTCTTGATGA
CATCATTTGTTTACATTTTGTTTCAAATTGCCTGCTCAGATTACACATTT
TTTTCTTTATTAGCAGCTCTAATTTTGGCTATTGTTTGCATTGGTTAGGC
AGGCCCATATCAGCATATTGATTGTTGTTGTTTGGTTCGTGTCAAATCCC
AATGTTAAGGGCCCATTCACAACTTTAAAATGTCTATTCACAGAATTGTT
TTACTTTCTAACAAAGTTAAACATAAGAGAAAAGTTTTCACCGAGAAAAA
GAAATCATTCACCGTCCATTTTATTTTTAAAATGCCGTATTATGTTAATT
TTGAGAAACTCGCCGTATACGTTTGGTATCCCTAACTGAATAAACTAGGC
CAATTTGATGGTAAAATCCAGGCGTAATCTACCGAACAAAATCAAATTCT
ATTTTTAATCGAATTTATCTTATCGAAACTAATCGAAATTAATACTTCGA
TTAGGCTTCGATTAATCGAAACTATCGAGCTGTAATCGAATTAATCGAAT
TTTCCAAGGTTTTTCTCAATTAGTTTGATTACCTTTGATTAATTCGATAA
TGTTCGATAACTTGGATAAATGTTTGATAAGTTTCGATTTAGATTCGATA
AGCTTTGATAAGTCTTCAATACCTTCGATTAATGACAAGAATAATTCTAT
TGCATATTCCAGAAAATAGATTTTGAAAACCAAGAAAGAATTACAATTTT
GAAAATTTTCTAAGAATTACAATATTGAAAAAGAGATAGATTTTGAGTGA
GATTTTTTCGTTCAATTGACATAGTCTGGCCATAAGTCCAAAGGACAAGA
GTGCAAATTACAGTTTTATGACATAGTAATTATCTTTATATACTATGAAT
AGATAATTGCTTTGTCATAAAAATCTACTCTCCTACAACAAAGTTTGCAC
CCCTCTTGTCTTAGAATTTGGAATTGAAGATGACTCTAATTATAGCCGCT
AATTACTGAAGACCTTGACTGTAAAATAATCTTTGTAGATTGCGCAATGC
GTTAATAAATTTTGCATTCTGATATGAAATTTGGCCTGGAGAGTTAGTTC
ACTAAAAATTCAATGTTTAATAATTTGTAATTCTTTTCTGCTTTTAGAAC
CGCCCAATCAAAAAAGGTATACAAATTCGTATACTATCGACGCTTTTAAT
CAGAATCCACCCATCAGCCCCCTTCCGCCCAAACTACCAGACACGTTGGG
TGAACTGCTAGCAGAATACAATCTTCAAATGTATTTACCGAAGCTGGAAG
GTGAAGCGTTGGATGTAGCAACGTTTTTGGAGTTGTGCGATAACGATTTG
AAAGAATTGGGCATTGAGTAAGTTGTAATATTTTCTCGTTTGATTTTTGA
AGCAACTTCAGCCTTGTATGGTCTACGCTCGTTAATTGGATGCCCCGTTT
TCAAAAAAATTCGAATGCCCCGTAAGATTTGTGGTCCCTTGAGAGAAATA
AGCTCCTTGACCCAAACCCTGAAGGGTTTAGAGAGTGTTACGGTACAATG
TACTCAAAAACTTTACGAACAATTTGATACTGGCTACTTGGTTCGTATGA
ATCGCTCTTTTCTTGTCAATGAAAGTTTATGAGCAGAAGAAGTAAAAAAA
AATACTGAAATCAAATGAGATTTTGCAGCTATGGTTATCACAATCACAAT
CACTTCTTCTTATCACCAGCATGTTCTAATATTTCTTGTGTCAAAGTTTG
AGACATTCGCAGAATATTTTTGTTTACCTTTACAACCATTTTTTTGTTCT
TAGTAAATTTGGACCACGTAAAAAGATGTTGTTAGCAATACGAGAATGCA
AAGAGCGAAAGGCTGCTCATGACCCTAATGTAAGTCTATATGCATAATTC
AGTTTACAAATTTTGTTTTTACCAAAATGCTGTGCTACATAAAATTTAAT
AACCAAATCTTCATTTTCTGTGAACATAAGACTTATCTTAACCCTTTGAA
CACGCTTGAAAATGGTGAAAGATTTTCATGATTTTTTTTTTGAAACATAA
ACATAGATTCTACCCCCTATCCTTAGGGGGTCTGAGACTTTCAAAAATTT
TTGTAAGGGGGGTCTTTTTTCTTTCAATTTCCTAAGGGCGTTATGGGAGT
TTTTTTAGGAAATTTGCGCCGTACCAGTAAATTCGTTGTAGTTTTCCCGG
GGGACAGGTCGTAACCAAATGGGTTGGCGGNAAATTCGTTGTAGTTTTCC
CGGGGGACAGGTCGTAACCAAATGGGTTGGCGGGAATTGACCTTCCTTAA
GACTCATACATTGGGGAAATTTCTTGCAGAAAGTTGTGAGACAAGGCTTC
TGAAAAAGACATCCCCTTCTGGAGCTTTAGTCCGTACAGCCAAGCTACTG
AAGTACCACCGCAGTTATAATTTTAATATTCCTTTCTTTTTAGAAAAATT
GCAAAGCATTGATGGAGACATCAGAAGAGCTCCAGGAACACCTAATCGGC
TGTCAGTTGCAGTTTCAAAATAAATCTTTTTCCTCCAATCNATGCGAAGC
CGATTTTTGTGTGTTCCTGGAGCGAGTGTAAAAGTACTTTCGAAACGAAA
GCTAAGTTTCTGGTGCACCTGAAACGCCACTCTGGTTAGTTGCAGTTTCA
AAATAAATCTTTTTCCTCCAATCTTGTATCAAGGGTATTTTGATATTTGC
CCCTCTATTCGACCTTTTCACAATGGGTTGTTCCAGGTTGTTCCTGGAAA
ATATTAGGATGCTGGTATCCTCTAAGAATCATGCTTCCTATACTTGAGCT
TTCTTAGATGAAAAATTTACGCCTGCGACGCTGAAATCACAAGAAAAATT
TTATCCTTCAAAAAAGGTCGAATTTCTTCCAATCTTGCCCCCCCCCTAAA
CGAAAATTCGTGACTACGCCTCTGGGTTTTATTGAGGTCTGCGAATCAGA
CTAGTTTAAATTGTCCATATTCTTAAAA

Coding sequence (CDS) from alignment at sc0005859:1..3228-

>TCONS_00044596 ID=TCONS_00044596|Name=TCONS_00044596|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0005859:1..3228- (Clytia hemisphaerica)
AAAAATTGCAAAGCATTGATGGAGACATCAGAAGAGCTCCAGGAACACCT
AATCGGCTGTCAGTTGCAGTTTCAAAATAAATCTTTTTCCTCCAATCNAT
GCGAAGCCGATTTTTGTGTGTTCCTGGAGCGAGTGTAATAAATTTGGACC
ACGTAAAAAGATGTTGTTAGCAATACGAGAATGCAAAGAGCGAAAGGCTG
CTCATGACCCTAATAACCGCCCAATCAAAAAAGGTATACAAATTCGTATA
CTATCGACGCTTTTAATCAGAATCCACCCATCAGCCCCCTTCCGCCCAAA
CTACCAGACACGTTGGGTGAACTGCTAGCAGAATACAATCTTCAAATGTA
TTTACCGAAGCTGGAAGGTGAAGCGTTGGATGTAGCAACGTTTTTGGAGT
TGTGCGATAACGATTTGAAAGAATTGGGCATTGAATGATGAATTCAATAT
CGCAAGAACTTTCTCAGAAGAAACGTGGAGTAGGAGCCATAAACCGACTA
AATGAAAAATTGCAAAGCATTGATGGAGACATCAGAAGAGCTCCAGGAAC
ACCTAATCGGCTGTCAGTTGCAGTTTCAAAATAAATCTTTTTCCTCCAAT
CNATGCGAAGCCGATTTTTGTGTGTTCCTGGAGCGAGTGTAATAAATTTG
GACCACGTAAAAAGATGTTGTTAGCAATACGAGAATGCAAAGAGCGAAAG
GCTGCTCATGACCCTAATAACCGCCCAATCAAAAAAGGTATACAAATTCG
TATACTATCGACGCTTTTAATCAGAATCCACCCATCAGCCCCCTTCCGCC
CAAACTACCAGACACGTTGGGTGAACTGCTAGCAGAATACAATCTTCAAA
TGTATTTACCGAAGCTGGAAGGTGAAGCGTTGGATGTAGCAACGTTTTTG
GAGTTGTGCGATAACGATTTGAAAGAATTGGGCATTGAATGATGAATTCA
ATATCGCAAGAACTTTCTCAGAAGAAACGTGGAGTAGGAGCCATAAACCG
ACTAAATGAAAAATTGCAAAGCATTGATGGAGACATCAGAAGAGCTCCAG
GAACACCTAATCGGCTGTCAGTTGCAGTTTCAAAATAAATCTTTTTCCTC
CAATCNATGCGAAGCCGATTTTTGTGTGTTCCTGGAGCGAGTGTAATAAA
TTTGGACCACGTAAAAAGATGTTGTTAGCAATACGAGAATGCAAAGAGCG
AAAGGCTGCTCATGACCCTAATAACCGCCCAATCAAAAAAGGTATACAAA
TTCGTATACTATCGACGCTTTTAATCAGAATCCACCCATCAGCCCCCTTC
CGCCCAAACTACCAGACACGTTGGGTGAACTGCTAGCAGAATACAATCTT
CAAATGTATTTACCGAAGCTGGAAGGTGAAGCGTTGGATGTAGCAACGTT
TTTGGAGTTGTGCGATAACGATTTGAAAGAATTGGGCATTGAATGATGAA
TTCAATATCGCAAGAACTTTCTCAGAAGAAACGTGGAGTAGGAGCCATAA
ACCGACTAAATGAAAAATTGCAAAGCATTGATGGAGACATCAGAAGAGCT
CCAGGAACACCTAATCGGCTGTCAGTTGCAGTTTCAAAATAAATCTTTTT
CCTCCAATCNATGCGAAGCCGATTTTTGTGTGTTCCTGGAGCGAGTGTAA
TAAATTTGGACCACGTAAAAAGATGTTGTTAGCAATACGAGAATGCAAAG
AGCGAAAGGCTGCTCATGACCCTAATAACCGCCCAATCAAAAAAGGTATA
CAAATTCGTATACTATCGACGCTTTTAATCAGAATCCACCCATCAGCCCC
CTTCCGCCCAAACTACCAGACACGTTGGGTGAACTGCTAGCAGAATACAA
TCTTCAAATGTATTTACCGAAGCTGGAAGGTGAAGCGTTGGATGTAGCAA
CGTTTTTGGAGTTGTGCGATAACGATTTGAAAGAATTGGGCATTGAATGA
TGAATTCAATATCGCAAGAACTTTCTCAGAAGAAACGTGGAGTAGGAGCC
ATAAACCGACTAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028215XLOC_028215Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044596-proteinTCONS_00044596-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044596-exon-sc0005859-1575043694:3056..3228TCONS_00044596-exon-sc0005859-1575043694:3056..3228Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1575043694:1612..1831TCONS_00044596-exon-sc0005859-1575043694:1612..1831Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1575043694:1100..1175TCONS_00044596-exon-sc0005859-1575043694:1100..1175Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1575043694:1..535TCONS_00044596-exon-sc0005859-1575043694:1..535Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1510915933:3056..3228TCONS_00044596-exon-sc0005859-1510915933:3056..3228Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1510915933:1612..1831TCONS_00044596-exon-sc0005859-1510915933:1612..1831Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1510915933:1100..1175TCONS_00044596-exon-sc0005859-1510915933:1100..1175Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1510915933:1..535TCONS_00044596-exon-sc0005859-1510915933:1..535Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1491911889:3056..3228TCONS_00044596-exon-sc0005859-1491911889:3056..3228Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1491911889:1612..1831TCONS_00044596-exon-sc0005859-1491911889:1612..1831Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1491911889:1100..1175TCONS_00044596-exon-sc0005859-1491911889:1100..1175Clytia hemisphaericaexon
TCONS_00044596-exon-sc0005859-1491911889:1..535TCONS_00044596-exon-sc0005859-1491911889:1..535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005859supercontigsc0005859:1..3228 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29416	1.21849	0.858975	0.0988674	8.72621	7.9418	7.17174	7.03637	3.72295	6.89392	5.78716	4.56579	3.29441	2.55826	3.02737	2.33867	6.33162	4.19883	1.04365	2.03528	5.56597	5.61918	1.99553	3.67497	7.13905	8.25292	4.58934	3.19994	1.38688	1.01235
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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