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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044591 ID=TCONS_00044591|Name=TCONS_00044591|organism=Clytia hemisphaerica|type=transcript|length=591bp
ccaagaagtatttgtgtctctaagccattttttcatgtgaaaattctcaa
ttatacgtcttgattcgcgaaagtttgtacgcctaaagtatctatcaata
tttttctatgtttttctatTTAGACTCAAAACGAACTCGGAAAGAGTAAA
GCAGCACTAGACACATTAAACAAAGCAATCGAATTGAACCCAAAAAACGC
ATTGTGTAAATATCAAAAAGCGAGCATACTTCTCGCAAACTCCAGGCCTC
AGgAAGCATTAGTCATATTAGAAGATGTTAAACGTCTACAATCGAAAGAT
TCATTGGTTTATTTCCTTATTGGAAGGGTGTACCAACAATTAGAGGAGCC
ACATCTAGCGCAAATGAACTTTTCATGGGCATTAAGTTTGGACCCACAAG
GCACCAACACCATGATCAAAGATGCGATGAACCAACAACGTTTCGGAGAT
CAAAGCACTGTTGATGACGAGGATGAATTTACATTGGGCGATGAAGCGAC
AAATGAACTCCAGGATAGTGAAATGTCCGATTCTTAAAATTTCTTACACT
TCTTTGATACAgtggactctcgctaattcgaactcgaacgg Run BLAST on NCBI transcript from alignment at sc0005852:1..1901- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044591 ID=TCONS_00044591|Name=TCONS_00044591|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at sc0005852:1..1901- (Clytia hemisphaerica)
CCAAGAAGTATTTGTGTCTCTAAGCCATTTTTTCATGTGAAAATTCTCAA
TTATACGTCTTGATTCGCGAAAGTTTGTACGCCTAAAGTATCTATCAATA
TTTTTCTATGTTTTTCTATTTAGACTCAAAACGAACTCGGAAAGAGTAAA
GCAGCACTAGACACATTAAACAAAGCAATCGAATTGAACCCAAAAAACGC
ATTGTGTAAATATCAAAAAGCGAGCATACTTCTCGCAAACTCCAGGCCTC
AGGTGAGTCTTCTTGTTGAAAATCTCACCGGAAACCGGAAAATGTTAGAG
CAGAAGACTGCGAAGTATCTTTTCGGGGAACACCCGTTAGGAAAACGTCC
TTTCAGGGAAATGTCCTGACATGGTCATGGAAACATCCGTCGAGGGATCG
AATTGTCTGTCGGGGTAACGTCCGTTCGGGGAAATGTCCTGACATGGTCA
GGGGAACATTCGTCGAGAAATTGTCTGTCGGGGTAACGTCCGTTCGGGGA
AACATCCGGTTATAGTCGGAGAAATGTCCGTGCGGGGATTGTCTTTTGGG
AAACATTTGGTTACCAAAATAAAGAAACACAATCTGTTTTGGATTTGACA
CTCTGACATTAAGAGCTGATTTTGATAACGATATTTAACCCTTCTGATAG
ACCTTTTCATAAATTACGTCACGAACATAACTTGCCTCGTATTCAAACAA
TTCCCAAGTTGATTATGTCCCTTGAGACATTAAATGGTTTTATTTATTAT
TTATAAATAGAAAGTAGTTTTATAAAAACCCGCTGGGAATTAATCACCAT
GGAAATAATTTCAAAACGAGGCAAGTGATGGTCGTGTCGTGACGTAATTT
ATGAAAGGTCTATTGTATAAAGTATAAACGTTCAACACCTACCTAAAGGC
CATACACTTACCACATGTGGAAACCATCTATTAGGTAAACTCCCCTGTGA
GTGGTTTCCACGTGACAGAAAAAGTAAATTGCATGCACACTTGAAGCGAA
CGGATCTTACAATGGTGGTACTCTTAGGTTCCAAATAAACGGGGGGGGGG
TTGGAAAATTTTCGAAATTTTAATAAACGGGGGGACTTAATTGCCGGGGG
GTTGGAAATTGTTCTTCTATATAAGAATAAAATAGGGCAAATATAGGCTA
AAATCAGGCTATTTAGAGCCCCTTTGACAGCTGAAAATATTCTTAAAAAT
TAATTATAAATTAATTAGGGGGGGGCGAATAAGGTCTGGGGGTTGGAAAA
TTTTCGAAAAATTAACAAGCGGAGGGGGTGTTTATTTGGAACCTAAGAGT
ATCCAATATTTAACGACGAAATTTTTTCTTTTGTTTTTGTAGGAAGCATT
AGTCATATTAGAAGATGTTAAACGTCTACAATCGAAAGATTCATTGGTTT
ATTTCCTTATTGGAAGGGTAATCTTCACTTCTTTATTCACTTAAGTTCTA
CAATCACTGCAAAACAATTTGTCAGGCCTTCAAACTACACGTTTTTTATA
AAGCTTTATGGACCTAAAAATGCCCAATTTCTTAAAAGCAATTGCAGTAA
AATACACAACAATTGGTGAAAGTTAAGAACATCCTAAGGCTTTAAAAGTT
TTGGACATTTTTATAAAAATGACTTTCTCTCCACCAGGTGTACCAACAAT
TAGAGGAGCCACATCTAGCGCAAATGAACTTTTCATGGGCATTAAGTTTG
GACCCACAAGGCACCAACACCATGATCAAAGATGCGATGAACCAACAACG
TTTCGGAGATCAAAGCACTGTTGATGACGAGGATGAATTTACATTGGGCG
ATGAAGCGACAAATGAACTCCAGGATAGTGAAATGTCCGATTCTTAAAAT
TTCTTACACTTCTTTGATACAGTGGACTCTCGCTAATTCGAACTCGAACG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044591-exon-sc0005852-1575043694:1650..1901 | TCONS_00044591-exon-sc0005852-1575043694:1650..1901 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1575043694:485..559 | TCONS_00044591-exon-sc0005852-1575043694:485..559 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1575043694:1..264 | TCONS_00044591-exon-sc0005852-1575043694:1..264 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1510915933:1650..1901 | TCONS_00044591-exon-sc0005852-1510915933:1650..1901 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1510915933:485..559 | TCONS_00044591-exon-sc0005852-1510915933:485..559 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1510915933:1..264 | TCONS_00044591-exon-sc0005852-1510915933:1..264 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1491911889:1650..1901 | TCONS_00044591-exon-sc0005852-1491911889:1650..1901 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1491911889:485..559 | TCONS_00044591-exon-sc0005852-1491911889:485..559 | Clytia hemisphaerica | exon |
| TCONS_00044591-exon-sc0005852-1491911889:1..264 | TCONS_00044591-exon-sc0005852-1491911889:1..264 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005852 | supercontig | sc0005852:1..1901 - |
Blast
BLAST of TCONS_00044591 vs. Swiss-Prot (Human)
Match: CDC27 (Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 5.557e-37 Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 1
Query: 97 NIFLCFSI*TQNELGKSKAALDTLNKAIELNPKNALCKYQKASILLANSRPQEALVILEDVKRLQSKDSLVYFLIGRVYQQLEEPHLAQMNFSWALSLDPQGTNTMIKDAMNQQRFGDQSTVDDEDEFTLGDEATNELQDSEMSDS 534
++ LC Q+ L KS+ ALDTLNKAI ++PKN LCK+ +AS+L AN + + AL LE++K++ K+SLVYFLIG+VY++L + HLA MNFSWA+ LDP+G N IK+A++++ D ++E +G T+E Q+S M+D+
Sbjct: 669 SVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMG---TDESQESSMTDA 811
The following BLAST results are available for this feature:
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