TCONS_00044581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044581
Unique NameTCONS_00044581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044581 ID=TCONS_00044581|Name=TCONS_00044581|organism=Clytia hemisphaerica|type=transcript|length=588bp
GATACATTATCTCCCAGTGCCTGTAATGCTTTGATGACATCAGTGTCAGC
TTTTAAGAAGGCTTCCCACCAAGCACCTTTAGATTTCCCATTGAATCTAC
CGATCTGATCGCACCCGGTAAAAACGTGAAATCCGATCAAGGCAGCACAT
AATTCAGGACCCAATATCTCATAGCATTTTCCGATTGGTGTCGACTTTTG
ATCATCTTTACCTCCTGTGACAAAGTTGGTATCAGCACACAATGAATCGT
ATTTGTGGATGAGCAATAAAAACACATCTGTATCGGGTGAGAAGATATCC
ACTTGAGAAAATGGATCCCTGGTGAAAACATCTAGGGCGTGAAGAAGAAG
CAAAGTGTCTGCTTCTTCATGGTCATGTGTCAGCAGGTCGTTTGAATAAC
CATGGAGATTGGAAACAGATTTGGTGTCGTATACCACCGCGAATCCGATC
GCTTGCTCCACACCACGGTACTTGACTGTTCTTTTCTCGAAGTGCTTAAT
TGCAGCAATGGAGAGGTATTTTGTTAGATCAGCTTTTGTTTCTACGTGTG
ACAGGAACTTCTTGTGGTTTATGATTGTATCGTCTTCG
Run BLAST on NCBI

protein sequence of TCONS_00044581-protein

>TCONS_00044581-protein ID=TCONS_00044581-protein|Name=TCONS_00044581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
EDDTIINHKKFLSHVETKADLTKYLSIAAIKHFEKRTVKYRGVEQAIGFA
VVYDTKSVSNLHGYSNDLLTHDHEEADTLLLLHALDVFTRDPFSQVDIFS
PDTDVFLLLIHKYDSLCADTNFVTGGKDDQKSTPIGKCYEILGPELCAAL
IGFHVFTGCDQIGRFNGKSKGAWWEAFLKADTDVIKALQALGDNV
Run BLAST on NCBI

transcript from alignment at sc0005830:261..848

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044581 ID=TCONS_00044581|Name=TCONS_00044581|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0005830:261..848 (Clytia hemisphaerica)
CGAAGACGATACAATCATAAACCACAAGAAGTTCCTGTCACACGTAGAAA
CAAAAGCTGATCTAACAAAATACCTCTCCATTGCTGCAATTAAGCACTTC
GAGAAAAGAACAGTCAAGTACCGTGGTGTGGAGCAAGCGATCGGATTCGC
GGTGGTATACGACACCAAATCTGTTTCCAATCTCCATGGTTATTCAAACG
ACCTGCTGACACATGACCATGAAGAAGCAGACACTTTGCTTCTTCTTCAC
GCCCTAGATGTTTTCACCAGGGATCCATTTTCTCAAGTGGATATCTTCTC
ACCCGATACAGATGTGTTTTTATTGCTCATCCACAAATACGATTCATTGT
GTGCTGATACCAACTTTGTCACAGGAGGTAAAGATGATCAAAAGTCGACA
CCAATCGGAAAATGCTATGAGATATTGGGTCCTGAATTATGTGCTGCCTT
GATCGGATTTCACGTTTTTACCGGGTGCGATCAGATCGGTAGATTCAATG
GGAAATCTAAAGGTGCTTGGTGGGAAGCCTTCTTAAAAGCTGACACTGAT
GTCATCAAAGCATTACAGGCACTGGGAGATAATGTATC

Coding sequence (CDS) from alignment at sc0005830:261..848

>TCONS_00044581 ID=TCONS_00044581|Name=TCONS_00044581|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at sc0005830:261..848 (Clytia hemisphaerica)
GAAGACGATACAATCATAAACCACAAGAAGTTCCTGTCACACGTAGAAAC
AAAAGCTGATCTAACAAAATACCTCTCCATTGCTGCAATTAAGCACTTCG
AGAAAAGAACAGTCAAGTACCGTGGTGTGGAGCAAGCGATCGGATTCGCG
GTGGTATACGACACCAAATCTGTTTCCAATCTCCATGGTTATTCAAACGA
CCTGCTGACACATGACCATGAAGAAGCAGACACTTTGCTTCTTCTTCACG
CCCTAGATGTTTTCACCAGGGATCCATTTTCTCAAGTGGATATCTTCTCA
CCCGATACAGATGTGTTTTTATTGCTCATCCACAAATACGATTCATTGTG
TGCTGATACCAACTTTGTCACAGGAGGTAAAGATGATCAAAAGTCGACAC
CAATCGGAAAATGCTATGAGATATTGGGTCCTGAATTATGTGCTGCCTTG
ATCGGATTTCACGTTTTTACCGGGTGCGATCAGATCGGTAGATTCAATGG
GAAATCTAAAGGTGCTTGGTGGGAAGCCTTCTTAAAAGCTGACACTGATG
TCATCAAAGCATTACAGGCACTGGGAGATAATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028200XLOC_028200Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044581-proteinTCONS_00044581-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044581-exon-sc0005830-1491911889:261..848TCONS_00044581-exon-sc0005830-1491911889:261..848Clytia hemisphaericaexon
TCONS_00044581-exon-sc0005830-1510915933:261..848TCONS_00044581-exon-sc0005830-1510915933:261..848Clytia hemisphaericaexon
TCONS_00044581-exon-sc0005830-1575043694:261..848TCONS_00044581-exon-sc0005830-1575043694:261..848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005830supercontigsc0005830:261..848 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.631184	0.798032	0.601745	0.338008	0.157765	0.390834	0	0.249372	0.0622563	0.581884	0	0	0	0	0.0995082	0	0	0	0	0	0.201007	0.0896971	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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