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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044572 ID=TCONS_00044572|Name=TCONS_00044572|organism=Clytia hemisphaerica|type=transcript|length=655bp
ccgcttattaagttttgagattttttccaacccccccgcttattccaacc
cccccggctattaggtacccgagagtagtgtATGTATCTTTCTTGCTTTT
CAGGGAGACAAAGATTGTGAGGATGAATCTTTTGTTAAAGTTGAAGGCgg
atttttcaaatcaaatccaCCCATCGACTCTACATACAAGATGCCATTTT
GTAAGGCGCCACAATGGGGTTGGGTAAATTCTTCGTGTAGCGTATCGTGT
GGTGTTGGCTATCTGAACAGTACAGTAGTTTGTATGGGTGCTGACGGAAC
AACTCATCCAGACCATTACTGCCCGTTCGAAGAAGACTTAGAACCTAAGA
TATTAGAGTGTGTCAATAATGTTTCATGTTATGATCTGACAGAATGGACA
GATTTTTCAAGCTGTGGTGGAGGGTGTGGTATTAATGGAACACAGAATCA
AACAAGAGAATGTCTCCGTGACGGAGAGCCGATTGCTAATTATGCAGAGT
GCATCAGTCTGGGAAAGATGGACGAATCCACGGAATTTTTAAACGTCACT
TGGTGTTATAATGAGAACGAACCATGCGCGTGTAAGTAATTCCAGGACTT
ATTAAGGGCtatatacactacacaatatattgctgagtgctgacaatata
ttgaa Run BLAST on NCBI protein sequence of TCONS_00044572-protein >TCONS_00044572-protein ID=TCONS_00044572-protein|Name=TCONS_00044572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MPFCKAPQWGWVNSSCSVSCGVGYLNSTVVCMGADGTTHPDHYCPFEEDL
EPKILECVNNVSCYDLTEWTDFSSCGGGCGINGTQNQTRECLRDGEPIAN
YAECISLGKMDESTEFLNVTWCYNENEPCACK Run BLAST on NCBI transcript from alignment at sc0005810:1014..3471- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044572 ID=TCONS_00044572|Name=TCONS_00044572|organism=Clytia hemisphaerica|type=transcript|length=2458bp|location=Sequence derived from alignment at sc0005810:1014..3471- (Clytia hemisphaerica)
CCGCTTATTAAGTTTTGAGATTTTTTCCAACCCCCCCGCTTATTCCAACC
CCCCCGGCTATTAGGTACCCGAGAGTAGTGTATGTATCTTTCTTGCTTTT
CAGGGAGACAAAGATTGTGAGGATGAATCTTTTGTTAAAGTTGAAGGCGG
ATTTTTCAAATCAAATCCACCCATCGACTCTACATACAAGATGCCATTTT
GTAGTAAGATTGTGTTTGTTTAAAGCACGAAGAGCTAGAGTAGAATCTCT
CACCTTATCCAGGCAAGAAAAAGTGAAGTCGCCTATTTCCCATCCAGATG
ACAGATTGTATCTAGCGGTTTCTTTGTTTTAGAGGACTGTATTTTTTGAA
ATATTGCGATAGATTTTATTTTCAATCCGGCGTTTGTGTAAAAACCACAC
TCGGGCGTTCTGGATGGGAAATAAGTGGCTTCATTTCCCATCCGATCCAG
GAGTCCTTCGGGCTTGGAAGTCAATTGTTCTTCCGATATGACATTTTGGC
AAAGACGATTATTTTTTCTCACTCTAACTAACTTGAGAGATAATGATTTT
TTTTGGATTAATGACCTACCTACCCTAGGATAGTAGATATATATTTCACT
ATGGCCCCATTTCCCATGTCTTAAGAATTTTTTTCTGCGTTTTGGAATCA
AAACGCCAAATATTTTTTTAAATTGCCTCACAATGTATCTGGGTGGGAGA
GATCTTAGGCGATCCTATCGTCTACACAAGATCACTAGGAAGGGAATATA
TTATGAAGCAGGATAAATTTGAAAACGGACGTTAGCGCCCAGGCGGAAAG
AGTAGTGGCGGAGCGTGTTTACAATTTGCTCCAAACTCTACCGATATTAT
TTTTTTCCGCAAACCGCTGTGATGGCTGCATACAGTGTATTATATTTTCA
CGTGTTTACTATCCTTCTAACAGACGATAGCATCGTCTTCTAGAGAGATT
AAAAGGCGGCACCCCCTGTCATCTTGTAAACCTAGTATCTCCAGGGCGCA
AAATGCAGATTTTTCCTTCAAGNAAAAGGCGGCACCCCCTGTCATCTTGT
AAACCTAGTATCTCCAGGGCGCAAAATGCAGATTTTTCCTTCAAGAAGGA
ATTTGATTTTCGTCATCATTTGATTAACTTGGAAATTCAACGTACTAAAA
AACACAAATCAAATGAAATATGCTGATATGGAATTTGTTAAAATCACCCT
TTTATTTGAAATATTTTCTACTGTACCTGATATTTACAGAGGCATCCGAG
TTGGCCTGGAGGATTTGAAAAATTAGCCGACAAAATAAGTGTCAACATGA
CTATTTGAAATATTTTTTACTTTTATATTTATAGAGGCGCCACAATGGGG
TTGGGTAAATTCTTCGTGTAGCGTATCGTGTGGTGTTGGCTATCTGAACA
GTACAGTAGTTTGTATGGGTGCTGACGGAACAACTCATCCAGACCATTAC
TGCCCGTTCGAAGAAGACTTAGAACCTAAGATATTAGAGTGTGTCAATAA
TGTTTCATGTTATGGTATGACCTAATTCTAATAACTACTTTTCTATCTGA
ATTTTTATCCAAAATAGATAAAACATAAAAAGCCTTGTGATGTGCAACCA
AATTAAAATAAAACGTAACACAATTTTTTTTTGAGACGATATTTCGACCT
GTTACGTGTCTTTTTCAAGTTTATTCAAGATAGTATAGTGAAAAAGTGTA
GTGTTGGTGTCGATTTATCAGGGCTCGAACCGGCTGGGATTTGTAGTTTT
TTCTCCATAGAACTGGTATTTAGTCCTCCAGAGCTGCTTCGACTTACATT
GTAAGCTTACAGCGCTGTACTGTACTGGAGCCTTGAATAGAAATAAAAAT
TGTAGTATCGGTGTTGCTCTGCTTTGGTTTGGAAATTTACGTGTCTTCCC
AGTGTAGTATCATTTTTATGGTAAATCAACGCTAACTTTTAAATGTTCAA
CATCAAAAGAGTCGCAAGCTATAAACAAGCCATTTAATGGCATGGCGCAG
AAATTTAACTTTAGGGTCATTACACTATGTATTCGAGTTTTTTATGTCAT
TTTTTACGGAAGATCATAACTAACTGCTTAAAACACACTACCAACTTAAA
TACTCTCCACTACTGCCCTAAATAAATGGAGAACTACTACTTATCACTTC
TTATCTTGTACTTATAGTTTCTCTTTATCCGTTTAGATCTGACAGAATGG
ACAGATTTTTCAAGCTGTGGTGGAGGGTGTGGTATTAATGGAACACAGAA
TCAAACAAGAGAATGTCTCCGTGACGGAGAGCCGATTGCTAATTATGCAG
AGTGCATCAGTCTGGGAAAGATGGACGAATCCACGGAATTTTTAAACGTC
ACTTGGTGTTATAATGAGAACGAACCATGCGCGTGTAAGTAATTCCAGGA
CTTATTAAGGGCTATATACACTACACAATATATTGCTGAGTGCTGACAAT
ATATTGAA Coding sequence (CDS) from alignment at sc0005810:1014..3471- >TCONS_00044572 ID=TCONS_00044572|Name=TCONS_00044572|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at sc0005810:1014..3471- (Clytia hemisphaerica)
ATCTGACAGAATGGACAGATTTTTCAAGCTGTGGTGGAGGGTGTGGTATT
AATGGAACACAGAATCAAACAAGAGAATGTCTCCGTGACGGAGAGCCGAT
TGCTAATTATGCAGAGTGCATCAGTCTGGGAAAGATGGACGAATCCACGG
AATTTTTAAACGTCACTTGGTGTTATAATGAGAACGAACCATGCGCGTGT
AAGTAAAGGCGCCACAATGGGGTTGGGTAAATTCTTCGTGTAGCGTATCG
TGTGGTGTTGGCTATCTGAACAGTACAGTAGTTTGTATGGGTGCTGACGG
AACAACTCATCCAGACCATTACTGCCCGTTCGAAGAAGACTTAGAACCTA
AGATATTAGAGTGTGTCAATAATGTTTCATGTTATGATGCCATTTTGTAA
TCTGACAGAATGGACAGATTTTTCAAGCTGTGGTGGAGGGTGTGGTATTA
ATGGAACACAGAATCAAACAAGAGAATGTCTCCGTGACGGAGAGCCGATT
GCTAATTATGCAGAGTGCATCAGTCTGGGAAAGATGGACGAATCCACGGA
ATTTTTAAACGTCACTTGGTGTTATAATGAGAACGAACCATGCGCGTGTA
AGTAAAGGCGCCACAATGGGGTTGGGTAAATTCTTCGTGTAGCGTATCGT
GTGGTGTTGGCTATCTGAACAGTACAGTAGTTTGTATGGGTGCTGACGGA
ACAACTCATCCAGACCATTACTGCCCGTTCGAAGAAGACTTAGAACCTAA
GATATTAGAGTGTGTCAATAATGTTTCATGTTATGATGCCATTTTGTAAT
CTGACAGAATGGACAGATTTTTCAAGCTGTGGTGGAGGGTGTGGTATTAA
TGGAACACAGAATCAAACAAGAGAATGTCTCCGTGACGGAGAGCCGATTG
CTAATTATGCAGAGTGCATCAGTCTGGGAAAGATGGACGAATCCACGGAA
TTTTTAAACGTCACTTGGTGTTATAATGAGAACGAACCATGCGCGTGTAA
GTAAAGGCGCCACAATGGGGTTGGGTAAATTCTTCGTGTAGCGTATCGTG
TGGTGTTGGCTATCTGAACAGTACAGTAGTTTGTATGGGTGCTGACGGAA
CAACTCATCCAGACCATTACTGCCCGTTCGAAGAAGACTTAGAACCTAAG
ATATTAGAGTGTGTCAATAATGTTTCATGTTATGATGCCATTTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044572-exon-sc0005810-1575043694:3269..3471 | TCONS_00044572-exon-sc0005810-1575043694:3269..3471 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1575043694:1958..2137 | TCONS_00044572-exon-sc0005810-1575043694:1958..2137 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1575043694:1014..1285 | TCONS_00044572-exon-sc0005810-1575043694:1014..1285 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1510915933:3269..3471 | TCONS_00044572-exon-sc0005810-1510915933:3269..3471 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1510915933:1958..2137 | TCONS_00044572-exon-sc0005810-1510915933:1958..2137 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1510915933:1014..1285 | TCONS_00044572-exon-sc0005810-1510915933:1014..1285 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1491911889:3269..3471 | TCONS_00044572-exon-sc0005810-1491911889:3269..3471 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1491911889:1958..2137 | TCONS_00044572-exon-sc0005810-1491911889:1958..2137 | Clytia hemisphaerica | exon |
| TCONS_00044572-exon-sc0005810-1491911889:1014..1285 | TCONS_00044572-exon-sc0005810-1491911889:1014..1285 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005810 | supercontig | sc0005810:1014..3471 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
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