TCONS_00044556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044556
Unique NameTCONS_00044556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044556 ID=TCONS_00044556|Name=TCONS_00044556|organism=Clytia hemisphaerica|type=transcript|length=434bp
AAAAACGTATTGCGAGCTCGGCGGTGGGAGCCGAAACATCAATTCTGTGC
AATGTCAAAGACGTGTGGAGAAAACTTATCACAAAATGAACATCGTCTCA
TCAAAAGACCAAGAAATAAATGGTATTAAGAAAAAGAAGTAAAGATGATT
GTTGGACTACACAACCAAAGAAACATCTTCAATGAACGAAGAATCGGAGA
ACCCTCGGGAAAAGAGGCCCGATATACAACTGAAGGAGTAATTGTTGTAC
TTCTTTTATTAattagttcatcattttttatacGAATACAATTTCTTGAA
CCGTAACCTAAatcttatttcttaaattcgaaaaatgctttacaatgtca
aattttgtcagaaatattccCCAACCCTATAAGCTCCTTCTATACCACAT
CAATTATTgccattgttttaaaaattatatatca
Run BLAST on NCBI

transcript from alignment at sc0005780:945..1378

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044556 ID=TCONS_00044556|Name=TCONS_00044556|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0005780:945..1378 (Clytia hemisphaerica)
tgatatataatttttaaaacaatggcAATAATTGATGTGGTATAGAAGGA
GCTTATAGGGTTGGggaatatttctgacaaaatttgacattgtaaagcat
ttttcgaatttaagaaataagatTTAGGTTACGGTTCAAGAAATTGTATT
CgtataaaaaatgatgaactaatTAATAAAAGAAGTACAACAATTACTCC
TTCAGTTGTATATCGGGCCTCTTTTCCCGAGGGTTCTCCGATTCTTCGTT
CATTGAAGATGTTTCTTTGGTTGTGTAGTCCAACAATCATCTTTACTTCT
TTTTCTTAATACCATTTATTTCTTGGTCTTTTGATGAGACGATGTTCATT
TTGTGATAAGTTTTCTCCACACGTCTTTGACATTGCACAGAATTGATGTT
TCGGCTCCCACCGCCGAGCTCGCAATACGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028176XLOC_028176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044556-exon-sc0005780-1491911889:945..1378TCONS_00044556-exon-sc0005780-1491911889:945..1378Clytia hemisphaericaexon
TCONS_00044556-exon-sc0005780-1510915933:945..1378TCONS_00044556-exon-sc0005780-1510915933:945..1378Clytia hemisphaericaexon
TCONS_00044556-exon-sc0005780-1575043694:945..1378TCONS_00044556-exon-sc0005780-1575043694:945..1378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005780supercontigsc0005780:945..1378 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.816559	0.653983	0	0	89.7067	50.4489	21.9457	28.5535	3.99558	7.5531	1.12309	6.10332	0.162174	0.345511	1.07302	0.523776	0	0.167238	0.167616	0.353176	0	1.12397	0.466545	0	0.904823	0.264024	0.705197	0.310807	0.723559	0.191832
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top