TCONS_00044553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044553
Unique NameTCONS_00044553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044553 ID=TCONS_00044553|Name=TCONS_00044553|organism=Clytia hemisphaerica|type=transcript|length=747bp
GGTGTAATGACGACTACTTGTTCAAATCGAATAATAGTGTGGAGAACGGC
AGAACAACCAGATCAATATTTGATCGAACATTTAGTTAATTCAACGTCAG
AAAAATGTCACAATGAATTGGTGTGTCATATTAAGGAAAATCAGGGTGAT
GCTTCATTGAAAGGGAATTCCCTGAGTGAAGATTCCTTGAGCAGAAATAA
GAAACAAGATTCCCTGAGAATTAGACCTGAAGGTGATTCCCTGCTTGAAG
AAAATGCTGATGTAAAAGAACCCTGCAAATGCAAGACATCAAATGAGACG
TTTTATGCAAGAGAGATTGGTTGCAAGTATGGCTTTGATCAAGCCTGTCC
TTTCTGCTTCTCCACAAGCCCAACACAACCCATCATGCTCAATTTGATGC
AGAATACCAAAAACTTACCAGTAGGGCGGTTGATGAGGTGCAAAGGCGGT
GCACCCATCCCACCTGTACGAATACTTACAGAAAAAGAACTAGATGAGTC
GACGGAAggtgaatctgaaaattgcaaaGTCAGCGAAATTGAATACGAAA
ATATCGACGTTAACGAATATTCAAAATGGCGTGTGCTAAATACGATTAAA
TCAAAGTTCAAATTTGATATTCAAGTGGACTGGAAACACGTGTGAGCTGC
AATCTTTGAGCGGCCTCGTTTTGAAGATAAAGATAAAGTGTGCCAACGAA
ATGGAGCCTATTTGTATCATCATTAAAACAGAAGGAAAAAGTACAGG
Run BLAST on NCBI

transcript from alignment at sc0005765:5..2194+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044553 ID=TCONS_00044553|Name=TCONS_00044553|organism=Clytia hemisphaerica|type=transcript|length=2190bp|location=Sequence derived from alignment at sc0005765:5..2194+ (Clytia hemisphaerica)
GGTGTAATGACGACTACTTGTTCAAATCGAATAATAGTGTGGAGAACGGC
AGAACAACCAGATCAATATTTGATCGAACATTTAGTTAATTCAACGTCAG
AAAAATGTCACAATGAATTGGTGTGTCATATTAAGGAAAATCAGGGTGAT
GCTTCATTGAAAGGGAATTCCCTGAGTGAAGGTAGTTCTCGCCGAAAGAA
AATTTCCCTGAAAAATAAAGGAGATTCCTTGAGCAGAAATAAGAAACAAG
ATTCCCTGAGAATTAGACCTGAAGGTGATTCCCTGCTTGAAGAAAATGCT
GATGTAAAAGAACCCTGCAAATGCAAGACATCAAATGAGACGTTTTATGC
AAGAGAGATTGGTTGCAAGTATGGCTTTGATCAAGGTACTTCAGAGGAAC
TCTTAACTTTATCTACATAATTAGAAATTAGATATTCTTTTCCACGACAT
ACTGTCAGATAGGTGAAGAAACAGGTGTCAAAGACCTCACGCTCGACTTT
TCTAATCAATTACTGAAACTAAACGAGCTAAACAAACTAGCACGGATGAT
ATAAAACCATTATTTGAGAATGGGTACTTTCTCTACAATTCAAGCTTTGA
CCGGGATGTTTGGTCATTtccaaccacaaccacaacCACATAATTTGCTG
TTTTCATTCAGCCAGCCAAAGCAAAGAATATTTTAAAGTCTGTTTCAAGA
GTGGACACTTTACCTCAATTACACCACATCTTGACATCTATTACTCATTC
ACAGTTATTATAGGCGATGAAAAGGCGAAGAAGAAGAAACTTATAGTGGT
GCATATAGTTTACAAGGAGAAACTGTTAGAAATAGTAAAGTTTCCACATT
TCCACTTTTAAGACAGACTTTGCTAACAAATATGAACCTTAAATCAAGTT
AGAACTTAATCGATATCTCGAATTCTTTAATTATTTTCATATCGATTTTG
TATTTCAGCCTGTCCTTTCTGCTTCTCCACAAGCCCAACACAACCCATCA
TGCTCAATTTGATGCAGAATACCAAAAACTTACCAGTAGGGCGGTTGATG
AGGTGCAAAGGCGGTGCACCCATCCCACCTGTACGAATACTTACAGAAAA
AGGTATATAAACAATTATCAACTCTTACACCAAAATTACGCTTTGGGTTC
AAGCTAACCAGAGTCCAATCATTAATATTTGAACCCTCATCGGGCCCTCA
TGTTATATCCACCAACTTTAATAggtgtttttgaaaatggtaccctaatg
gtagacTTATCAGGTTTacatcaaatttattttttaacatgaACTATATG
CTTTCATTAGACACCCCTGCATCAGTACAACCATCAGTACAATCGGGATA
TTTGAgaaaagaagttttattttgaagGATCCCAGCTAAGATTGGGTCGT
TTGaaggacaatttttttctaattcatatATAACCATATTTCCCCTTTAA
TTCTCAATTTTTCCAGAACTAGATGAGTCGACGGAAggtgaatctgaaaa
ttgcaaaGTCAGCGAAATTGAATACGAAAATATCGACGTTAACGAATATT
CAAAATGGCGTGTGCTAAATACGATTAAATCAAAGTTCAAATTTGATATT
CAAGGTAATATTCTGAAGGtaggttcaattggttcagagttgaaaattta
GCACTATCCATTTATCTTTTTCTAATTATTAACGCGAATATtaagaaaat
gctaaaatattttcaatcgaTCTTTTCACGCGTAGCTTCCAAAATAATTA
CTTATAGACCTTTTCAAACAatacgtcacgagcaacgctCACCTCGTTTT
CAactattgctatggtaattgagTTTATAAGAAGTTTACTCTATTATTAA
CAAAGGCAAATTTGAAAACTCGATGGATtcaatcaccttggtaatggttt
cgaaacgaggcagtcgttgcactTGGAAGCATATCTAGGCTAAGATATgg
gaaaattaagcatatggcaagcattacttgagcctattcgtaatttataa
aaactaCGGTGCCCTGAGTGTTTAGTCATCAAGGTACAAAAATTACTTTC
CAATTTCTATTTCTTTAGTGGACTGGAAACACGTGTGAGCTGCAATCTTT
GAGCGGCCTCGTTTTGAAGATAAAGATAAAGTGTGCCAACGAAATGGAGC
CTATTTGTATCATCATTAAAACAGAAGGAAAAAGTACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028173XLOC_028173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044553-exon-sc0005765-1491911889:5..185TCONS_00044553-exon-sc0005765-1491911889:5..185Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1510915933:5..185TCONS_00044553-exon-sc0005765-1510915933:5..185Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1575043694:5..185TCONS_00044553-exon-sc0005765-1575043694:5..185Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1491911889:228..389TCONS_00044553-exon-sc0005765-1491911889:228..389Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1510915933:228..389TCONS_00044553-exon-sc0005765-1510915933:228..389Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1575043694:228..389TCONS_00044553-exon-sc0005765-1575043694:228..389Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1491911889:963..1106TCONS_00044553-exon-sc0005765-1491911889:963..1106Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1510915933:963..1106TCONS_00044553-exon-sc0005765-1510915933:963..1106Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1575043694:963..1106TCONS_00044553-exon-sc0005765-1575043694:963..1106Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1491911889:1471..1608TCONS_00044553-exon-sc0005765-1491911889:1471..1608Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1510915933:1471..1608TCONS_00044553-exon-sc0005765-1510915933:1471..1608Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1575043694:1471..1608TCONS_00044553-exon-sc0005765-1575043694:1471..1608Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1491911889:2073..2194TCONS_00044553-exon-sc0005765-1491911889:2073..2194Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1510915933:2073..2194TCONS_00044553-exon-sc0005765-1510915933:2073..2194Clytia hemisphaericaexon
TCONS_00044553-exon-sc0005765-1575043694:2073..2194TCONS_00044553-exon-sc0005765-1575043694:2073..2194Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005765supercontigsc0005765:5..2194 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197831	0	0	0	0	0	2.713	0	0	0	0	0	0	0	0	0.668542	0	0	0	0	0	0	0	0	0	0	0	0.0965008	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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