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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044549 ID=TCONS_00044549|Name=TCONS_00044549|organism=Clytia hemisphaerica|type=transcript|length=908bp
NACGCAGGAACCCCTTTGCGCCATCCTCAAATACGATCTAATCATCGAGA
CATACTTGATTCATCGACGAGCGACGACCATACATATGAGGAACTGAACA
CTTACAATAGTGATGGAGGATATCGCAGTAATGCCAGCGGAAGAGGAAAT
CGGATGGATGACATCAGACGGAATCGAGTTGACAACAACAGAGGAGAAGC
CAGATCAAAGGATGACAGGCACATCAGTACATTCACGGTAGGAAAGAAGG
ACCTACCTGTCTTCACAGGTGAGGATACTGACAACATCATGTCCTTCTTC
GAACATTTTGAAAGGCTTGCTTTATGCAACGATTGGAGTGACGATAGAAT
CTTGAAGATCTTACCAATTACATTCGAGAGGAGTGCGGGTTTCTTCTACA
TGCAACTCTCTGCCGATACAAAGAAGTCCTATGAAAAGTTGAAAGCAGCA
ATGATTGCGAGATTCTCATCAATGCAAACGAGATGCTCCAGAAAAGCTCA
ACTGGCAGCTTTGAAACGATCTGATTTTACTTCTCTCGGCGACTACATTT
TCAAGCTAGAGACAATTGCCTTTCAATTGGGCCTGACCTCCGAACAAAAG
TTGGAGGCCCTGCTCAGTGGTTTGGATGAACCCCTTCGCACAGATGTCAT
ACTCAAAGAATTCAAAACCTTTGAGGAGGCGGTACCTTACATTACGTTGA
AAGACCCAATAACAACCTCAacgaaagattcgaataaaatGATACAAGAA
ATACATGCAAAATTATCAAGTGGACGAGCGTGTTCTGTTCAACCGAACCA
GGCTTCGAATAgcaatcaaaatttcgaaaaggacttagaaagaaaaatgt
cagAGATGTTGGAGGAAAAATTACAACTAACAGCTGCGCAACCCCAACAA
TTGAATGC Run BLAST on NCBI protein sequence of TCONS_00044549-protein >TCONS_00044549-protein ID=TCONS_00044549-protein|Name=TCONS_00044549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
XAGTPLRHPQIRSNHRDILDSSTSDDHTYEELNTYNSDGGYRSNASGRGN
RMDDIRRNRVDNNRGEARSKDDRHISTFTVGKKDLPVFTGEDTDNIMSFF
EHFERLALCNDWSDDRILKILPITFERSAGFFYMQLSADTKKSYEKLKAA
MIARFSSMQTRCSRKAQLAALKRSDFTSLGDYIFKLETIAFQLGLTSEQK
LEALLSGLDEPLRTDVILKEFKTFEEAVPYITLKDPITTSTKDSNKMIQE
IHAKLSSGRACSVQPNQASNSNQNFEKDLERKMSEMLEEKLQLTAAQPQQ
LN Run BLAST on NCBI transcript from alignment at sc0005762:328..1235 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044549 ID=TCONS_00044549|Name=TCONS_00044549|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at sc0005762:328..1235 (Clytia hemisphaerica)
GCATTCAATTGTTGGGGTTGCGCAGCTGTTAGTTGTAATTTTTCCTCCAA
CATCTctgacatttttctttctaagtccttttcgaaattttgattgcTAT
TCGAAGCCTGGTTCGGTTGAACAGAACACGCTCGTCCACTTGATAATTTT
GCATGTATTTCTTGTATCattttattcgaatctttcgtTGAGGTTGTTAT
TGGGTCTTTCAACGTAATGTAAGGTACCGCCTCCTCAAAGGTTTTGAATT
CTTTGAGTATGACATCTGTGCGAAGGGGTTCATCCAAACCACTGAGCAGG
GCCTCCAACTTTTGTTCGGAGGTCAGGCCCAATTGAAAGGCAATTGTCTC
TAGCTTGAAAATGTAGTCGCCGAGAGAAGTAAAATCAGATCGTTTCAAAG
CTGCCAGTTGAGCTTTTCTGGAGCATCTCGTTTGCATTGATGAGAATCTC
GCAATCATTGCTGCTTTCAACTTTTCATAGGACTTCTTTGTATCGGCAGA
GAGTTGCATGTAGAAGAAACCCGCACTCCTCTCGAATGTAATTGGTAAGA
TCTTCAAGATTCTATCGTCACTCCAATCGTTGCATAAAGCAAGCCTTTCA
AAATGTTCGAAGAAGGACATGATGTTGTCAGTATCCTCACCTGTGAAGAC
AGGTAGGTCCTTCTTTCCTACCGTGAATGTACTGATGTGCCTGTCATCCT
TTGATCTGGCTTCTCCTCTGTTGTTGTCAACTCGATTCCGTCTGATGTCA
TCCATCCGATTTCCTCTTCCGCTGGCATTACTGCGATATCCTCCATCACT
ATTGTAAGTGTTCAGTTCCTCATATGTATGGTCGTCGCTCGTCGATGAAT
CAAGTATGTCTCGATGATTAGATCGTATTTGAGGATGGCGCAAAGGGGTT
CCTGCGTN Coding sequence (CDS) from alignment at sc0005762:328..1235 >TCONS_00044549 ID=TCONS_00044549|Name=TCONS_00044549|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0005762:328..1235 (Clytia hemisphaerica)
ATTCAATTGTTGGGGTTGCGCAGCTGTTAGTTGTAATTTTTCCTCCAACA
TCTctgacatttttctttctaagtccttttcgaaattttgattgcTATTC
GAAGCCTGGTTCGGTTGAACAGAACACGCTCGTCCACTTGATAATTTTGC
ATGTATTTCTTGTATCattttattcgaatctttcgtTGAGGTTGTTATTG
GGTCTTTCAACGTAATGTAAGGTACCGCCTCCTCAAAGGTTTTGAATTCT
TTGAGTATGACATCTGTGCGAAGGGGTTCATCCAAACCACTGAGCAGGGC
CTCCAACTTTTGTTCGGAGGTCAGGCCCAATTGAAAGGCAATTGTCTCTA
GCTTGAAAATGTAGTCGCCGAGAGAAGTAAAATCAGATCGTTTCAAAGCT
GCCAGTTGAGCTTTTCTGGAGCATCTCGTTTGCATTGATGAGAATCTCGC
AATCATTGCTGCTTTCAACTTTTCATAGGACTTCTTTGTATCGGCAGAGA
GTTGCATGTAGAAGAAACCCGCACTCCTCTCGAATGTAATTGGTAAGATC
TTCAAGATTCTATCGTCACTCCAATCGTTGCATAAAGCAAGCCTTTCAAA
ATGTTCGAAGAAGGACATGATGTTGTCAGTATCCTCACCTGTGAAGACAG
GTAGGTCCTTCTTTCCTACCGTGAATGTACTGATGTGCCTGTCATCCTTT
GATCTGGCTTCTCCTCTGTTGTTGTCAACTCGATTCCGTCTGATGTCATC
CATCCGATTTCCTCTTCCGCTGGCATTACTGCGATATCCTCCATCACTAT
TGTAAGTGTTCAGTTCCTCATATGTATGGTCGTCGCTCGTCGATGAATCA
AGTATGTCTCGATGATTAGATCGTATTTGAGGATGGCGCAAAGGGGTTCC
TGCGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044549-exon-sc0005762-1491911889:328..1235 | TCONS_00044549-exon-sc0005762-1491911889:328..1235 | Clytia hemisphaerica | exon |
| TCONS_00044549-exon-sc0005762-1510915933:328..1235 | TCONS_00044549-exon-sc0005762-1510915933:328..1235 | Clytia hemisphaerica | exon |
| TCONS_00044549-exon-sc0005762-1575043694:328..1235 | TCONS_00044549-exon-sc0005762-1575043694:328..1235 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005762 | supercontig | sc0005762:328..1235 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005162 | Retrotrans_gag_dom |
Blast
The following BLAST results are available for this feature:
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