TCONS_00044519 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00044519
Unique Name	TCONS_00044519
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	787

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0005714:1008..3573-
coding sequence from alignment at sc0005714:1008..3573-

transcript sequence

>TCONS_00044519 ID=TCONS_00044519|Name=TCONS_00044519|organism=Clytia hemisphaerica|type=transcript|length=787bp
AAAACATTTATGAATTTTATTTATGGATTTAAAATGCCATTGGTGTTATg
caacttttttcaattttagggcTTGAAGCCCACGGTGGGTACACATTTTG
TGGATATGCTGCATTAGCTCTCCTTGGACAAGAACAAAAAGCAAATACTA
AAAAATTACTGAAATGGACTGTTAACCGACAAATGAAATTCGAAGGAGGC
TTTCAGGGTCGGACAAATAAACTAGTGGATGGATGTTATTCATTTTGGCA
AGGTGCACTATTACCTATTATCCACAACATCCTTCAAATGTATGGAGATG
AAGATCTCAGTCAAGAAAATTGGATGTTCAATCAAAAAGCACTAGAAGAG
TACATATTGGTCAATTGTCAAAGTTATAGCGGTGGACTGTTAGACAAACC
TGGCAAGTCAAGAGATTACTACCACACATGCTACTGTTTGAGTGGTCTCT
CCATCGCAGAACACTTCATCGTGGATGATGTGAGGGAGAGCAAGGAAATT
GTCGGTGGCAAGAAAAACGTTCTGGTAAGTTAAGTACTTGTACAATTTAC
TGTCTTCTTTAAATGAGCCTGAGTATTTTGAACTGCTACAAGCTTTAGCT
ATGCCTGGAGAATATCGAAAATTGTATCAATCATTTGTGGGTGAACAGGG
GTCAAATCTTCTAAAAAGATGATTGTGGAAGGAAAAAGCTTTTACAGGAA
TAATGGTTTTTAAAAAGGAAAGGCAGGACTCGGCAAAACATTGAgagaca
aaagattttatttttttaagtttttatttataaaaag

Run BLAST on NCBI

protein sequence of TCONS_00044519-protein

>TCONS_00044519-protein ID=TCONS_00044519-protein|Name=TCONS_00044519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MQLFSILGLEAHGGYTFCGYAALALLGQEQKANTKKLLKWTVNRQMKFEG
GFQGRTNKLVDGCYSFWQGALLPIIHNILQMYGDEDLSQENWMFNQKALE
EYILVNCQSYSGGLLDKPGKSRDYYHTCYCLSGLSIAEHFIVDDVRESKE
IVGGKKNVLVS

Run BLAST on NCBI

transcript from alignment at sc0005714:1008..3573-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00044519 ID=TCONS_00044519|Name=TCONS_00044519|organism=Clytia hemisphaerica|type=transcript|length=2566bp|location=Sequence derived from alignment at sc0005714:1008..3573- (Clytia hemisphaerica)
AAAACATTTATGAATTTTATTTATGGATTTAAAATGCCATTGGTGTTATG
CAACTTTTTTCAATTTTAGGGCTTGAAGCCCACGGTGGGTACACATTTTG
TGGATATGCTGCATTAGCTCTCCTTGGACAAGAACAAAAAGCAAATACTA
AAAAATTACTGGTACATAAATGAATTACTTTCTCTACAACTCAGAATTGT
CCATTAAAAATATACTAGGTGGGTTTTTAGCTCTAGAGCATATTATAACA
TTATGGAAATACCTTTGTAAGATTATATCTTTTTGTTGTCAATCCATTCT
TTTTTAATACCCTACATTCTTTTCTTATAGAAATGGACTGTTAACCGACA
AATGAAATTCGAAGGAGGCTTTCAGGTTCGCAGATTATTATTTTGATTTT
TTAAAAGCACTTATGATGCTTATTATTGTAAAGTTCACAAAATCGATTTT
ATTTTATTTTTTTTAATTTTTGAGCATTCAATCAAATTTTTCAATCAAAT
TTTTACACGCTAAGATTATTCTCANTTGAGCATTCAATCAAATTTCAATC
AAATTTTTACACGCTAAGATTATTCTCAACTTCAGTTGAGCTAGAATCTG
AGAATGTCTCTGTGTGTGTCTGTCTGTGTGTATGTTCCAAAACTTTGGGG
CAGCCTGGAGACTTCAAAATTTGTCAGATTTGGCTGAAATTTGGCACACT
TGTTCCTTGGGTGAATATCTGGGGACGTGTTTTTATTTTTCAAAAATTTT
GATTTTTGGGGCGTGGGGGCCAGTTTTTTTGCCAAAATGATTATTTATGA
CTTCAATAATGAGTTTTAGAGCTAGTTTGTTTTGCTACAATCAGGCCTTC
GAATAATCTGAAGCTTCTGAATTGAGCCCACTGCGTTGCGCACGTTCGAC
TATTCAAGAAATAGCATACATATTATAAGAAGCTTAATAAAAGTTGAAAC
ACTTCAAATTTTCCAGGGTCGGACAAATAAACTAGTGGATGGATGTTATT
CATTTTGGCAAGGTGCACTATTACCTATTATCCACAACATCCTTCAAATG
TATGGAGATGAAGATCTCAGTCAAGAAAATTGGATGTTCAATCAAAGTGA
GTCTCTGTTTTAAAATTTTCCAAGAAAATGTATTTTAGAAATCCCATTAA
AACTATAACGCTCCACTATTTGGAAAGAAAATCGTCACTTGATTATTTTC
TGTTTGTGTTTGGAACAAGTTGTATGGGTTTTTAGTGAGCTTAAAAGCCT
TTGCCTAAAGTGGGGGGGGTTTCATGGGTGGCGGAGGAGCGGAAGTGGCC
CTTTTTTCGGACAGAGTGGCGGAATTTGGCGAAAATTTAGACGGAATTAC
GGAAATTGGTTTCTCTGACGGAGACAGAAAATTAGACAATTTTAGTGCGG
AAAAACAGAATTTAGCAAAAAAATTTGCGGAATTTCGAAATTGGCAAAAA
ATATTCAAAATTTGCGGAATTTTCGACAAAAATATTGAATTTCAAAGGAA
TTTTCGGTGACGGAATTTTGGTTCAATTTAAGACGGTTTGACGGAAATTG
GAGAAAAGATTGGCGGAATTGCGGAATCGGGTACCCCATGAAACCCCCCT
TAAAGTGTCATTAAGCTTAGACACGTCACTTTCCTATCTAGAAGTTTAAA
ATTCCATATCCGGTATTTCTCATGAGTTGTTACTTAAAAAAACGATAATT
TGTATCTATTTTTACAGAAGCACTAGAAGAGTACATATTGGTCAATTGTC
AAAGTTATAGCGGTGGACTGTTAGACAAACCTGGCAAGTAAGTAATAATA
GAGCATATCTCAGGGGCTAATACAAAATAAAAACTAAAAAGTCAAACAAA
AAATACCTAATTATCCTAATTCCATGTTTCTATGTTTTTTCTTTGAGGAC
GTTGCCCATATAGTTCTTTTTACCCTAGTCATGAAAGTCATTAATTTACA
GATAGGCAAAAGTGTAAATTAAATTTAAATTCAGTCTAACATCGCTAAAA
AAATGATATTCCAGCACTGGCTCAAACCTTCAATATCTCGATTTGCTTCC
CCAAAAGTCTATTTTCACAAATTTTAATTCTAAATAAACCAAATATTTTA
ATCATTTAAAACAGGTTAAAATCTTTCCAGATTTTTACGTAAATTACAGC
TTTATTGAAGGTTTGTTCATCTCTCCTTGGTTTAGGTCAAGAGATTACTA
CCACACATGCTACTGTTTGAGTGGTCTCTCCATCGCAGAACACTTCATCG
TGGATGATGTGAGGGAGAGCAAGGAAATTGTCGGTGGCAAGAAAAACGTT
CTGGTAAGTTAAGTACTTGTACAATTTACTGTCTTCTTTAAATGAGCCTG
AGTATTTTGAACTGCTACAAGCTTTAGCTATGCCTGGAGAATATCGAAAA
TTGTATCAATCATTTGTGGGTGAACAGGGGTCAAATCTTCTAAAAAGATG
ATTGTGGAAGGAAAAAGCTTTTACAGGAATAATGGTTTTTAAAAAGGAAA
GGCAGGACTCGGCAAAACATTGAGAGACAAAAGATTTTATTTTTTTAAGT
TTTTATTTATAAAAAG

Coding sequence (CDS) from alignment at sc0005714:1008..3573-

>TCONS_00044519 ID=TCONS_00044519|Name=TCONS_00044519|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0005714:1008..3573- (Clytia hemisphaerica)
GTCAAGAGATTACTACCACACATGCTACTGTTTGAGTGGTCTCTCCATCG
CAGAACACTTCATCGTGGATGATGTGAGGGAGAGCAAGGAAATTGTCGGT
GGCAAGAAAAACGTTCTGGTAAGTTAAAAGCACTAGAAGAGTACATATTG
GTCAATTGTCAAAGTTATAGCGGTGGACTGTTAGACAAACCTGGCAAGGT
CGGACAAATAAACTAGTGGATGGATGTTATTCATTTTGGCAAGGTGCACT
ATTACCTATTATCCACAACATCCTTCAAATGTATGGAGATGAAGATCTCA
GTCAAGAAAATTGGATGTTCAATCAAAAAATGGACTGTTAACCGACAAAT
GAAATTCGAAGGAGGCTTTCAGATGCAACTTTTTTCAATTTTAGGGCTTG
AAGCCCACGGTGGGTACACATTTTGTGGATATGCTGCATTAGCTCTCCTT
GGACAAGAACAAAAAGCAAATACTAAAAAATTACTGGTCAAGAGATTACT
ACCACACATGCTACTGTTTGAGTGGTCTCTCCATCGCAGAACACTTCATC
GTGGATGATGTGAGGGAGAGCAAGGAAATTGTCGGTGGCAAGAAAAACGT
TCTGGTAAGTTAAAAGCACTAGAAGAGTACATATTGGTCAATTGTCAAAG
TTATAGCGGTGGACTGTTAGACAAACCTGGCAAGGTCGGACAAATAAACT
AGTGGATGGATGTTATTCATTTTGGCAAGGTGCACTATTACCTATTATCC
ACAACATCCTTCAAATGTATGGAGATGAAGATCTCAGTCAAGAAAATTGG
ATGTTCAATCAAAAAATGGACTGTTAACCGACAAATGAAATTCGAAGGAG
GCTTTCAGATGCAACTTTTTTCAATTTTAGGGCTTGAAGCCCACGGTGGG
TACACATTTTGTGGATATGCTGCATTAGCTCTCCTTGGACAAGAACAAAA
AGCAAATACTAAAAAATTACTGGTCAAGAGATTACTACCACACATGCTAC
TGTTTGAGTGGTCTCTCCATCGCAGAACACTTCATCGTGGATGATGTGAG
GGAGAGCAAGGAAATTGTCGGTGGCAAGAAAAACGTTCTGGTAAGTTAAA
AGCACTAGAAGAGTACATATTGGTCAATTGTCAAAGTTATAGCGGTGGAC
TGTTAGACAAACCTGGCAAGGTCGGACAAATAAACTAGTGGATGGATGTT
ATTCATTTTGGCAAGGTGCACTATTACCTATTATCCACAACATCCTTCAA
ATGTATGGAGATGAAGATCTCAGTCAAGAAAATTGGATGTTCAATCAAAA
AATGGACTGTTAACCGACAAATGAAATTCGAAGGAGGCTTTCAGATGCAA
CTTTTTTCAATTTTAGGGCTTGAAGCCCACGGTGGGTACACATTTTGTGG
ATATGCTGCATTAGCTCTCCTTGGACAAGAACAAAAAGCAAATACTAAAA
AATTACTGGTCAAGAGATTACTACCACACATGCTACTGTTTGAGTGGTCT
CTCCATCGCAGAACACTTCATCGTGGATGATGTGAGGGAGAGCAAGGAAA
TTGTCGGTGGCAAGAAAAACGTTCTGGTAAGTTAAAAGCACTAGAAGAGT
ACATATTGGTCAATTGTCAAAGTTATAGCGGTGGACTGTTAGACAAACCT
GGCAAGGTCGGACAAATAAACTAGTGGATGGATGTTATTCATTTTGGCAA
GGTGCACTATTACCTATTATCCACAACATCCTTCAAATGTATGGAGATGA
AGATCTCAGTCAAGAAAATTGGATGTTCAATCAAAAAATGGACTGTTAAC
CGACAAATGAAATTCGAAGGAGGCTTTCAGATGCAACTTTTTTCAATTTT
AGGGCTTGAAGCCCACGGTGGGTACACATTTTGTGGATATGCTGCATTAG
CTCTCCTTGGACAAGAACAAAAAGCAAATACTAAAAAATTACTGGTCAAG
AGATTACTACCACACATGCTACTGTTTGAGTGGTCTCTCCATCGCAGAAC
ACTTCATCGTGGATGATGTGAGGGAGAGCAAGGAAATTGTCGGTGGCAAG
AAAAACGTTCTGGTAAGTTAAAAGCACTAGAAGAGTACATATTGGTCAAT
TGTCAAAGTTATAGCGGTGGACTGTTAGACAAACCTGGCAAGGTCGGACA
AATAAACTAGTGGATGGATGTTATTCATTTTGGCAAGGTGCACTATTACC
TATTATCCACAACATCCTTCAAATGTATGGAGATGAAGATCTCAGTCAAG
AAAATTGGATGTTCAATCAAAAAATGGACTGTTAACCGACAAATGAAATT
CGAAGGAGGCTTTCAGATGCAACTTTTTTCAATTTTAGGGCTTGAAGCCC
ACGGTGGGTACACATTTTGTGGATATGCTGCATTAGCTCTCCTTGGACAA
GAACAAAAAGCAAATACTAAAAAATTACTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_028142	XLOC_028142	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00044519-protein	TCONS_00044519-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0005714	supercontig	sc0005714:1008..3573 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
92.4999	88.2866	97.2969	87.2347	18.7898	16.5486	16.493	15.6622	21.9309	20.3737	18.034	19.5401	17.0228	14.9651	21.9578	21.2825	22.1635	17.7106	11.027	15.4308	17.8038	18.1497	44.5488	37.878	13.6415	13.7628	9.84724	8.44332	23.572	23.1832

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001330	PFTB_repeat
IPR008930	Terpenoid_cyclase/PrenylTrfase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

Blast

[Close]

BLAST of TCONS_00044519 vs. Swiss-Prot (Human)
Match: FNTB (Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.492e-63
Identity = 97/158 (61.39%), Postives = 120/158 (75.95%), Query Frame = 3

Query:   63 ILGLEAHGGYTFCGYAALALLGQEQKANTKKLLKWTVNRQMKFEGGFQGRTNKLVDGCYSFWQGALLPIIHNILQMYGDEDLSQENWMFNQKALEEYILVNCQSYSGGLLDKPGKSRDYYHTCYCLSGLSIAEHF----IVDDVRESKEIVGGKKNVL 524
            + G+EAHGGYTFCG AAL +L +E+  N K LL+W  +RQM+FEGGFQGR NKLVDGCYSFWQ  LLP++H  L   GD  LS  +WMF+Q+AL+EYIL+ CQ  +GGLLDKPGKSRD+YHTCYCLSGLSIA+HF    ++ DV     ++G  +N L
Sbjct:  242 VPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDV-----VLGVPENAL 394

The following BLAST results are available for this feature:

BLAST of TCONS_00044519 vs. Swiss-Prot (Human)

BLAST of TCONS_00044519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FNTB	2.492e-63	61.39	Protein farnesyltransferase subunit beta OS=Homo s...	[more]

You are here

TCONS_00044519 (transcript) - C. hemisphaerica