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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044509 ID=TCONS_00044509|Name=TCONS_00044509|organism=Clytia hemisphaerica|type=transcript|length=3942bp
CATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAG
ACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACAGAAGTCGC
TCCTGAGGAAAATCAACCATCCGAAAAGACTGAAGACGCTCAAGAGGAAG
TCCAACTATCCGAAAAAACTAAAGTCGCTTCAGTTGAAAGTAAACCGTCT
GAAAAGACTGAAATTGTTCCAGTGGAAGCTCAACCATCCGAAAAGACTGA
AGTCGCTCCTGTGGAAGCTCACCCATTTGAAAAAACTGAGGTCACTCCTG
TGGAAACTCAACTATCTGAAAAGACTGAAGTTGCTCCAGAAAAAACTCAA
CCATCTGAAAAGACTGAATTCGCTCCTGTGGAAACTCAACCGTCCGAAAA
GACTGAAATCGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCG
CTCCAGAAAAAACTCAACCGTCCGAAAAGACTGAAGTTGCTCCTGTAGAA
GCTCAACCATCTGAAAAGACTGAAATCGTCCCAGTGGAAACTCAACCATT
CAAAAAGATTGAAATCGCTCAAGAGCAAACTCAACCATCTGAAAAGACTG
AAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCT
GTGGAAACTCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCA
ACAATCCGAAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAA
AGACTGAAGTCGCTCCAGTTGAAAGTAAACCGTCTGAAAAGACTGAAATT
GTCCCAGTGGAAGCTCAACCATTTGAAAGGACTGAGGTCGCTCCAGTGGA
AACTCAACTATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCAT
CTGAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACTATCTGAAAAGACT
GAAGTTGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCC
TGAGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTC
AATCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACTATCTGAA
AAGACTGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGT
CGCTCCAGAGGAAGCTCAACTATCTGAAAAGACGGAAGTCGCTCCTGTAG
AAGCTCAACCATCTGAAAAGACTGAAGTTGCTCCAGAGGAAGTTCAACCA
TCTGAAAAGAATGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGAC
TGAAGTCGCTCAAGAGGAAGATCAACCATCTGAAAAGACTGAAATCGTCC
CAGTGGAAACTCAACCATTCAAAAAGATTGAAATCGCTCAAGAGCAAACT
CAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCCATCTGA
AAAGACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGACTGAAG
TCGCTCAAGAGGAAAATCAACCATCCGAAAAGACTGAAATCGCCCCTGTG
GAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCC
ATCTGAAAAGACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGA
CTGAAATCGCCCCTGTGGAAACTCAACCATCTGAAAAGACTGAAACAACA
CCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCTGTGGAAAA
TCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCAACCATCCG
AAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAAAGACTGAA
GTCGCTCCAGTTGAAAGTAAACTGTCTGAAAAGACTGAAATTGTCCCAGT
GGAAGCTCGACCATTTGAAAAGACTGAGGTCGCTCCAGTGGAAACTCAAC
TATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCTGAAAAG
ACTGAAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACNCGTCCCAG
TGGAAACTCAACCATTCAAAAAGATTGAAATCGCTCAAGAGCAAACTCAA
CCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCCATCTGAAAA
GACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGACTGAAATCG
CTCCTGTGGAAACTCAACCATCCGAAAAGACTGAAGTCGCTCAAGAGGAA
GTCCAACTATCCGAAAAAACTGAAGTCGCTCCAGTTGAAAGTAAACTGTC
TGAAAAGACTGAAGTCGCTCCTGTAGAAACTCAACCATCTGAAAAGACTG
AAGTCGCTCCAGAGGAAGCTCAAATATCTGAAAAGACTGAGGTCACTTCT
GTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCCTGAGGAAACTCA
GCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCTGAAA
AGACTGAAGTCGCTCCTGAGGAAACTCAGCCATCCGAAAAGACTGAAGTC
GCTCCTGTGGAAACTCAATCATCTGAAAAGACTGAAGTCGCTCCAGAGGA
ATATCAACTATCTAAAAAGACTGAAGTCGCTCCTGTGAAAACTCAACCAT
CTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACCATCCGAAGGGAAT
GAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCC
TGAGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTC
AATCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACCATCTGAA
AAGACTGAAGTTGCTCCAGAGGAAGTTCAACCATCTGAAAAGAATGAAGT
CGCTCCTGTGGAAACTCAACCATCTGAAAAGACTGAAGTCGCTCAAGAGG
AAGCTCAACCATCTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCT
CAAGAGCAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGT
TAAGCCATCTGAAAAGACTGAAGTCGCTCCTGAGGAAGATCAACCATCCG
AAAAGTCTGAAGTTGCTCCAGAGGAAGCTCAACTATCTGAAAAGACTGAA
GTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACTAAAGTCGCTCCAGA
GGAAACTCAACCATCTGAAAAGACAGAAATATCTCCTGTCGAAGTTCAAT
CATCTGACAAGACTGAAAAGGCTCCAGAGGAAACTCGACTAACCGAAAAG
ACCGAAGTCGCTCCAGAGGAAACTCATCTACCTGAAAAGACCGGGTACTC
TCCTGATAATGCTGAGGTGGCTCCAGAGGAGACTCGACTACCTGAAAAGA
CTGAAGTTGCAGAGGAATTTCAACCAGAAATACCATACAATCCTTTTCTC
TCATCTTATGAAACAGGATTCAAAACCAGCTCACCTAAAGTTCATACAGC
TCTAACTGAAAATGAAGGTtcaaagaaacaacaaaattcaGATGATTTAT
CCATCAACGATCGTAGATCTATGCAAAACTTGGGAGCAATCGACCAatgt
gaaaatgatgaaaaagttAATAATGAAATTGAAGAAGATTATGACCCTTT
CCTTTCTGCATACGAGACAGGTTTCACTACCAGATCCCCTGATGACATCT
TAACAGATGGTGTACATAAATATGTAGATTATGGTGATGTTTCTTCATGG
CTTCAAGATAATAGTATTCAAATGCTTAGCGAGATTGCCACAGATGGGGA
AGAATCATCCAGAGAAGACAGCATCACTGTATCAGAATGTGATTCAATCT
CACTCCACGATTTAAACCATGAATTGAAAGGCATTGAAATTGAGCTAGGT
GATTCTGAGAATCTTACTTTAGATGAACGAAAGATGTTGGTA Run BLAST on NCBI transcript from alignment at sc0005694:7..3948- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044509 ID=TCONS_00044509|Name=TCONS_00044509|organism=Clytia hemisphaerica|type=transcript|length=3942bp|location=Sequence derived from alignment at sc0005694:7..3948- (Clytia hemisphaerica)
CATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAG
ACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACAGAAGTCGC
TCCTGAGGAAAATCAACCATCCGAAAAGACTGAAGACGCTCAAGAGGAAG
TCCAACTATCCGAAAAAACTAAAGTCGCTTCAGTTGAAAGTAAACCGTCT
GAAAAGACTGAAATTGTTCCAGTGGAAGCTCAACCATCCGAAAAGACTGA
AGTCGCTCCTGTGGAAGCTCACCCATTTGAAAAAACTGAGGTCACTCCTG
TGGAAACTCAACTATCTGAAAAGACTGAAGTTGCTCCAGAAAAAACTCAA
CCATCTGAAAAGACTGAATTCGCTCCTGTGGAAACTCAACCGTCCGAAAA
GACTGAAATCGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCG
CTCCAGAAAAAACTCAACCGTCCGAAAAGACTGAAGTTGCTCCTGTAGAA
GCTCAACCATCTGAAAAGACTGAAATCGTCCCAGTGGAAACTCAACCATT
CAAAAAGATTGAAATCGCTCAAGAGCAAACTCAACCATCTGAAAAGACTG
AAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCT
GTGGAAACTCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCA
ACAATCCGAAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAA
AGACTGAAGTCGCTCCAGTTGAAAGTAAACCGTCTGAAAAGACTGAAATT
GTCCCAGTGGAAGCTCAACCATTTGAAAGGACTGAGGTCGCTCCAGTGGA
AACTCAACTATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCAT
CTGAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACTATCTGAAAAGACT
GAAGTTGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCC
TGAGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTC
AATCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACTATCTGAA
AAGACTGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGT
CGCTCCAGAGGAAGCTCAACTATCTGAAAAGACGGAAGTCGCTCCTGTAG
AAGCTCAACCATCTGAAAAGACTGAAGTTGCTCCAGAGGAAGTTCAACCA
TCTGAAAAGAATGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGAC
TGAAGTCGCTCAAGAGGAAGATCAACCATCTGAAAAGACTGAAATCGTCC
CAGTGGAAACTCAACCATTCAAAAAGATTGAAATCGCTCAAGAGCAAACT
CAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCCATCTGA
AAAGACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGACTGAAG
TCGCTCAAGAGGAAAATCAACCATCCGAAAAGACTGAAATCGCCCCTGTG
GAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCC
ATCTGAAAAGACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGA
CTGAAATCGCCCCTGTGGAAACTCAACCATCTGAAAAGACTGAAACAACA
CCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCTGTGGAAAA
TCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCAACCATCCG
AAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAAAGACTGAA
GTCGCTCCAGTTGAAAGTAAACTGTCTGAAAAGACTGAAATTGTCCCAGT
GGAAGCTCGACCATTTGAAAAGACTGAGGTCGCTCCAGTGGAAACTCAAC
TATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCTGAAAAG
ACTGAAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACNCGTCCCAG
TGGAAACTCAACCATTCAAAAAGATTGAAATCGCTCAAGAGCAAACTCAA
CCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCCATCTGAAAA
GACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGACTGAAATCG
CTCCTGTGGAAACTCAACCATCCGAAAAGACTGAAGTCGCTCAAGAGGAA
GTCCAACTATCCGAAAAAACTGAAGTCGCTCCAGTTGAAAGTAAACTGTC
TGAAAAGACTGAAGTCGCTCCTGTAGAAACTCAACCATCTGAAAAGACTG
AAGTCGCTCCAGAGGAAGCTCAAATATCTGAAAAGACTGAGGTCACTTCT
GTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCCTGAGGAAACTCA
GCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCTGAAA
AGACTGAAGTCGCTCCTGAGGAAACTCAGCCATCCGAAAAGACTGAAGTC
GCTCCTGTGGAAACTCAATCATCTGAAAAGACTGAAGTCGCTCCAGAGGA
ATATCAACTATCTAAAAAGACTGAAGTCGCTCCTGTGAAAACTCAACCAT
CTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACCATCCGAAGGGAAT
GAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCC
TGAGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTC
AATCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACCATCTGAA
AAGACTGAAGTTGCTCCAGAGGAAGTTCAACCATCTGAAAAGAATGAAGT
CGCTCCTGTGGAAACTCAACCATCTGAAAAGACTGAAGTCGCTCAAGAGG
AAGCTCAACCATCTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCT
CAAGAGCAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGT
TAAGCCATCTGAAAAGACTGAAGTCGCTCCTGAGGAAGATCAACCATCCG
AAAAGTCTGAAGTTGCTCCAGAGGAAGCTCAACTATCTGAAAAGACTGAA
GTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACTAAAGTCGCTCCAGA
GGAAACTCAACCATCTGAAAAGACAGAAATATCTCCTGTCGAAGTTCAAT
CATCTGACAAGACTGAAAAGGCTCCAGAGGAAACTCGACTAACCGAAAAG
ACCGAAGTCGCTCCAGAGGAAACTCATCTACCTGAAAAGACCGGGTACTC
TCCTGATAATGCTGAGGTGGCTCCAGAGGAGACTCGACTACCTGAAAAGA
CTGAAGTTGCAGAGGAATTTCAACCAGAAATACCATACAATCCTTTTCTC
TCATCTTATGAAACAGGATTCAAAACCAGCTCACCTAAAGTTCATACAGC
TCTAACTGAAAATGAAGGTTCAAAGAAACAACAAAATTCAGATGATTTAT
CCATCAACGATCGTAGATCTATGCAAAACTTGGGAGCAATCGACCAATGT
GAAAATGATGAAAAAGTTAATAATGAAATTGAAGAAGATTATGACCCTTT
CCTTTCTGCATACGAGACAGGTTTCACTACCAGATCCCCTGATGACATCT
TAACAGATGGTGTACATAAATATGTAGATTATGGTGATGTTTCTTCATGG
CTTCAAGATAATAGTATTCAAATGCTTAGCGAGATTGCCACAGATGGGGA
AGAATCATCCAGAGAAGACAGCATCACTGTATCAGAATGTGATTCAATCT
CACTCCACGATTTAAACCATGAATTGAAAGGCATTGAAATTGAGCTAGGT
GATTCTGAGAATCTTACTTTAGATGAACGAAAGATGTTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044509-exon-sc0005694-1575043694:7..3948 | TCONS_00044509-exon-sc0005694-1575043694:7..3948 | Clytia hemisphaerica | exon |
| TCONS_00044509-exon-sc0005694-1510915933:7..3948 | TCONS_00044509-exon-sc0005694-1510915933:7..3948 | Clytia hemisphaerica | exon |
| TCONS_00044509-exon-sc0005694-1491911889:7..3948 | TCONS_00044509-exon-sc0005694-1491911889:7..3948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005694 | supercontig | sc0005694:7..3948 - |
Blast
The following BLAST results are available for this feature:
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