TCONS_00044490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044490
Unique NameTCONS_00044490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044490 ID=TCONS_00044490|Name=TCONS_00044490|organism=Clytia hemisphaerica|type=transcript|length=268bp
TAGCCACGCGGAGATCAGTGACGAGGGCCGCTACGTTATTCTGACGGCCA
GTGAAGGTTGCGATCCAGTCAACAGACTGTATATCTGTGATCTACAAAAG
CTTGATTACCAAATTACAGGTCTACTGCCCTACGAGAAAATTGTGGATAA
TTTTGATGCATCTTACGAGtttATAGCAAACGATGAGAACATTTTCACAT
TCCAAACGAACTTGAATGCGCCTCGTTATCGTTTAATCCGGATTGATATC
AACAAACCGCAACAGGTA
Run BLAST on NCBI

transcript from alignment at sc0005668:1738..3513-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044490 ID=TCONS_00044490|Name=TCONS_00044490|organism=Clytia hemisphaerica|type=transcript|length=1776bp|location=Sequence derived from alignment at sc0005668:1738..3513- (Clytia hemisphaerica)
TAGCCACGCGGAGATCAGTGACGAGGGCCGCTACGTTATTCTGACGGCCA
GTGAAGGTTGCGATCCAGTCAACAGACTGTATATCTGTGATCTACAAAAG
CTTGATTACCAAATTACAGGTATGTTCCTATGAAAAACGTTTTTATACAA
TAATAAGGTTCATATTTTGAAAAGTAGAAGTTCAAACTGTACTATTGTTT
GAAAAACCAAACTCAAAAAGCTGAGAAGAAAAAGAAAGGAAAGAAAAATC
ATTCAAAAGGGGGTTCATAAAGATACCAGATTTTGATCCAAAATAAGAAA
AGTACCGTCATTTCTCTGGATTAATGTGTATTCTAATTAATACGGATGTT
AACAATTTCTAATTAGTTTATCTCCTCTTATTATACTTGAATAATAATAT
TTCCAAATATAAATGGATCATCTACGCTTTCTGGGCTGTTTCTTATTTTG
TAGTGTATGGTAATTGGGAAAAGTCCGTCGGGAAACGTCTGTCGAGGAAA
ACGTCTGTCGGGGAAACGTCTGTCGGGGAAACGTTCGGTAATCGTATTCG
CATTGTTCGTAAAAAGATAAACTCCTGAATATCTTGATTGTTCTTTCAGG
TCTACTGCCCTACGAGAAAATTGTGGATAATTTTGATGCATCTTACGAGG
TATATGCTATTAAAGGTTTCTTCGATACAAAACTTGAATGATGGTACTGA
TAAAATGGTGGAAATTATTGCAGAGGTCTTACTAAGGCCCGGTGAATGGC
GAATTTTGCCGGTCCAAGGCACTAAAATTCCCCGGTCTAAAACTTCGGTT
CGTCGCCGTCTGAAGTGCATAATCACGCTAATCAATACCCCTGGCTGCTA
GAAACCAGTCTTCAATCTAGAAATCGCCGGAGTTAATTTTTCATTCGCCA
GCCTATAAAAAAAAACAAGGCAAAATCCTCCAAAACCTTCAAACTTTTCC
TGCCAATCCTTTCGGGGAGAAATAGTCTAAATAAACAAAGGATGTTTTTT
GGCTTTGAAAGACAATCTGGGCAACGATAATTACCCGGGGGGGTACTACC
CTTGCCGATGGCTGAGGTTCGAAAAATGGACCCTACGTGGGACTCGTTTT
TTCAAAAATTTTACCGCCGAAATTTGCGAAAAAAGTAACCCTGAATGGGA
CTGAAATTCCAAAATTTTCTCAATATTTCTACTGCTTCCCCAAATTTTCC
AAAAAAGGGCACCTTACGAGGGACTGATTTTTCTATTTTGGTGTTTTTGC
GACCCTACCTTGGACTCGTATCCCCCGGGGATAATTAAGTTAGTCAGAAA
CAGAATGATATTCTAGATGTTGAGAGCTGGATAGAAAAACTACCGAGACA
TTTTTTTTCAAACAACCATGGGACCCTGGCAAAAATAAGGTACCCGGGTG
CACCACAAATAAGTTTCTCTCTTTCAAGTAGCGTTTTCCGAGTTCTGTGA
AATTTAAATGAATCTGGAAGAATGGATCTCTTAAACTTCTGAAAGAGAAT
GATCAATAATTATGATGGGTCATTTTATTAAGTTTGGTTCATCAGATCAA
AAGTTATGCCCGAAATAAATAAAAAAGTTCACTTCCATAAACTAAAACCC
GGTACCATTTCTAGTCCCTATACCCCGCCCCGCTCCCGCCCAACCATTTG
AAGAATGTTTCTATTCTTTTGTTTCAGTTTATAGCAAACGATGAGAACAT
TTTCACATTCCAAACGAACTTGAATGCGCCTCGTTATCGTTTAATCCGGA
TTGATATCAACAAACCGCAACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028119XLOC_028119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044490-exon-sc0005668-1575043694:3395..3513TCONS_00044490-exon-sc0005668-1575043694:3395..3513Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1575043694:2865..2914TCONS_00044490-exon-sc0005668-1575043694:2865..2914Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1575043694:1738..1836TCONS_00044490-exon-sc0005668-1575043694:1738..1836Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1510915933:3395..3513TCONS_00044490-exon-sc0005668-1510915933:3395..3513Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1510915933:2865..2914TCONS_00044490-exon-sc0005668-1510915933:2865..2914Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1510915933:1738..1836TCONS_00044490-exon-sc0005668-1510915933:1738..1836Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1491911889:3395..3513TCONS_00044490-exon-sc0005668-1491911889:3395..3513Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1491911889:2865..2914TCONS_00044490-exon-sc0005668-1491911889:2865..2914Clytia hemisphaericaexon
TCONS_00044490-exon-sc0005668-1491911889:1738..1836TCONS_00044490-exon-sc0005668-1491911889:1738..1836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005668supercontigsc0005668:1738..3513 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.5778	14.7861	5.9428	1.29202	53.479	31.6949	38.2385	31.5869	11.7945	17.0443	17.1345	15.9864	9.03784	15.709	8.27878	8.32002	10.5864	6.73087	1.85981	4.65919	5.63856	4.95052	10.03	16.6171	43.2036	39.117	7.99661	5.97394	8.41476	7.91382
Blast
[Close]
BLAST of TCONS_00044490 vs. Swiss-Prot (Human)
Match: PPCE (Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.172e-28
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 2 
Query:    8 AEISDEGRYVILTASEGCDPVNRLYICDLQKLDYQITGLLPYEKIVDNFDASYEFIANDENIFTFQTNLNAPRYRLIRIDINKPQQ 265
            AE+SD+GRYV+L+  EGCDPVNRL+ CDLQ+    I G+L + K++DNF+  Y+++ N+  +FTF+TN  +P YR+I ID   P++
Sbjct:  238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESSGIAGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRQSPNYRVINIDFRDPEE 323
The following BLAST results are available for this feature:
BLAST of TCONS_00044490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPCE6.172e-2850.00Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 ... [more]
back to top