TCONS_00044461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044461
Unique NameTCONS_00044461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044461 ID=TCONS_00044461|Name=TCONS_00044461|organism=Clytia hemisphaerica|type=transcript|length=581bp
TAAAGATCAGAAGCGTGCAATTCAAAAGGGTGTTCTGAGTGATGCTATTC
ACACGTCGGCAAGCTCTCAACTAGTAACTTCTTGCAAACTCTAGCAAAAG
TTAATTGAAAAACAAACCCATCCAACACCAATGATGAACAGGGAAGGAAC
AATATGTAAGGAACAGACAGTGTCCATGATAGAAGAAAGACATCCATACA
TAAGAAAGACCACAAGGGCAAAAGTTAAGTATAtgggtttgttttgatct
taCAGGGGATCAGATATTACTCTTCGTTTCTAGCTGGGCTTAGATTCATC
GAACATGCTAAAACACATtaagttttctttctttgagaagttttaaaatg
agatacTGTATCGAAATGTCCTTTTAAAATGGTCATCAGAGAATCAGGTT
TAGTTCATTGATGTGTTCTAGAGAAAGATTCACGATCGCATTTTTTACAA
CATGTTTAAACTTTCGCTtggaaaatatttgattctaCAATCCCTCTTTC
AAAGCATCAAAAACTTTATATTGTTAAATCATACTATGCAAAGTctcttt
ttcctttaaaaaattgctcagtcagaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0005614:151..731

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044461 ID=TCONS_00044461|Name=TCONS_00044461|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at sc0005614:151..731 (Clytia hemisphaerica)
ttttttctgactgagcaattttttaaaggaaaaagagACTTTGCATAGTA
TGATTTAACAATATAAAGTTTTTGATGCTTTGAAAGAGGGATTGtagaat
caaatattttccaAGCGAAAGTTTAAACATGTTGTAAAAAATGCGATCGT
GAATCTTTCTCTAGAACACATCAATGAACTAAACCTGATTCTCTGATGAC
CATTTTAAAAGGACATTTCGATACAgtatctcattttaaaacttctcaaa
gaaagaaaacttaATGTGTTTTAGCATGTTCGATGAATCTAAGCCCAGCT
AGAAACGAAGAGTAATATCTGATCCCCTGtaagatcaaaacaaacccaTA
TACTTAACTTTTGCCCTTGTGGTCTTTCTTATGTATGGATGTCTTTCTTC
TATCATGGACACTGTCTGTTCCTTACATATTGTTCCTTCCCTGTTCATCA
TTGGTGTTGGATGGGTTTGTTTTTCAATTAACTTTTGCTAGAGTTTGCAA
GAAGTTACTAGTTGAGAGCTTGCCGACGTGTGAATAGCATCACTCAGAAC
ACCCTTTTGAATTGCACGCTTCTGATCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028093XLOC_028093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044461-exon-sc0005614-1491911889:151..731TCONS_00044461-exon-sc0005614-1491911889:151..731Clytia hemisphaericaexon
TCONS_00044461-exon-sc0005614-1510915933:151..731TCONS_00044461-exon-sc0005614-1510915933:151..731Clytia hemisphaericaexon
TCONS_00044461-exon-sc0005614-1575043694:151..731TCONS_00044461-exon-sc0005614-1575043694:151..731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005614supercontigsc0005614:151..731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.40232	5.4101	2.91554	1.58467	0.181927	0.101631	0.521016	0.459157	0.264262	1.42362	0.0966229	0.599669	0.281462	0.147587	0.350017	0.310558	0.258091	0.16127	0	0	0.29361	0.685029	3.25706	3.04908	0.102395	0.18277	0.151284	0.143893	4.24338	1.70318
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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