TCONS_00044459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044459
Unique NameTCONS_00044459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044459 ID=TCONS_00044459|Name=TCONS_00044459|organism=Clytia hemisphaerica|type=transcript|length=256bp
CAAATATTTagataattttttcaagaatttcctTTTACCTTTGCTAATTT
GGTAATTGCAACTCATAAACATAACAATGGGGTTGTCACAACATTCGAAT
TTAATTGTGTGATTTTTTAACAGAATTAAGAATGGAGCAACACTGACGTT
AGTCCTTGCCATGAGAGATGGCCCGATAAATATGAGGAGAGTGTCAGCAA
TGGAGGAGCCAGACATGCAAGAAATAGAAGAATATATGGATGCTAATAAG
TAAGCA
Run BLAST on NCBI

transcript from alignment at sc0005610:355..1492-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044459 ID=TCONS_00044459|Name=TCONS_00044459|organism=Clytia hemisphaerica|type=transcript|length=1138bp|location=Sequence derived from alignment at sc0005610:355..1492- (Clytia hemisphaerica)
CAAATATTTAGATAATTTTTTCAAGAATTTCCTTTTACCTTTGCTAATTT
GGTAATTGCAACTCATAAACATAACAATGGGGTTGTCACAACATTCGAAT
TTAATTGTGTGATTTTTTAACAGAATTAAGAATGGAGCAACACTGACGTT
AGTCCTTGCCATGAGAGATGGCCCGATAAATATGAGGAGAGGTAAAATTT
CCTTTATTAATTTTTAAAAATATTGAAATTATTGATTTGCCTGAGACCGT
CGTCCGAAAATCACACCAAAGTGTCCGAAAGAAAATTGGCACCCAAGTTA
TTTTGATTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTT
GACTAAAAAAACGAACAAATTTCCCCCTACTAGAGTCTTCATTTGGGGAT
GGGATGACTGAGCTAAATGAGGAATTTTATTAGAAACTTTTATTCAGAAT
ATATTCTTTGTTTTTATATAAAGGTTTATATTTACAAGCATACTGATGCT
CAAATTTGCAAAAAAAATGAGCATAATGTAATTTAAGCATAGCTCGAGGC
TGGGAATGTTTGTCATTCAAATTTTGAAAATGGTGAAAATGAGACAGGAG
GTAGACAATGATTATTTTGACTTAAACACATCTAATACAATGATCTTTAA
TGGACAACGTAGAATATTTATAATTTTATAAAATGATAAAAAAGTAAAGT
GAAAATGATCATCAGTCAAAATGGACGATGTTTTGAAAAAAACTTGCATA
TGATCAAGAATAAATTGAGGCTGAAAAATGAAATTTTGCCAAGCATAATG
AGCCTCAGATCGAAATCTCCCTTATGCTTATAAAACAAAAAGAGTGTATA
CATGCTGCATTTCGTCTATAACACAGTTTTTAATGGTGAATTAAATAGCG
AAAATTTTTAACCAAAATGATGTTCCAAATTTATCCTGTTTCACGTAGCC
GAGTCAGTCCACCTACATACACATGAATAGTGGCTAACAGCTGGCACTCG
ATTTGAAAAAATTACCAGAAATTAAAAAACGCACATCATTTAAAGGGTTA
ACGTTCCCCGTCTTTTGTTTTAGTGTCAGCAATGGAGGAGCCAGACATGC
AAGAAATAGAAGAATATATGGATGCTAATAAGTAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028091XLOC_028091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044459-exon-sc0005610-1575043694:1302..1492TCONS_00044459-exon-sc0005610-1575043694:1302..1492Clytia hemisphaericaexon
TCONS_00044459-exon-sc0005610-1575043694:355..419TCONS_00044459-exon-sc0005610-1575043694:355..419Clytia hemisphaericaexon
TCONS_00044459-exon-sc0005610-1510915933:1302..1492TCONS_00044459-exon-sc0005610-1510915933:1302..1492Clytia hemisphaericaexon
TCONS_00044459-exon-sc0005610-1510915933:355..419TCONS_00044459-exon-sc0005610-1510915933:355..419Clytia hemisphaericaexon
TCONS_00044459-exon-sc0005610-1491911889:1302..1492TCONS_00044459-exon-sc0005610-1491911889:1302..1492Clytia hemisphaericaexon
TCONS_00044459-exon-sc0005610-1491911889:355..419TCONS_00044459-exon-sc0005610-1491911889:355..419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005610supercontigsc0005610:355..1492 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.167	13.612	3.16097	2.31939	176.948	130.901	96.9096	84.0052	31.1714	40.7964	27.5771	28.8191	11.1403	9.64106	10.3041	9.78201	11.5267	10.7404	16.3224	5.4346	12.8213	10.8619	16.0049	17.4609	271.264	136.43	40.1946	22.4697	14.7185	24.4669
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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