TCONS_00044457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044457
Unique NameTCONS_00044457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044457 ID=TCONS_00044457|Name=TCONS_00044457|organism=Clytia hemisphaerica|type=transcript|length=431bp
GATTTGAGTTTAACAACAGATCAGGCTAGAGTAAAGTCTGGAGATTTGAG
AACAGTGGAATTATTGAGGATGTCTGCTCAACCAAGATATAATGATATGC
GCTATATCATGACTTTTGATGCCGAAATCGTTAGTTAAATTAATTTCAAA
TGTGtttggactttttttaaatatttttgataagagACCATATCTAATCC
AAGGGGGTATTTAGGCTATATGCTGCGAGTcataagggtcactttttccc
taaaagggtcctaaattcttgaaatgtggactaaaatttaaatttttttg
aaatagtctctctaagggtggcaaaaagccaaaaaagtgaaagaattttc
gaaattcagtctctctaggagtcgattttcgaactttagcATCTCACAAA
TCTAGTACCCCCCTCCCCGGTATTCAATCTC
Run BLAST on NCBI

transcript from alignment at sc0005603:3774..4204

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044457 ID=TCONS_00044457|Name=TCONS_00044457|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0005603:3774..4204 (Clytia hemisphaerica)
GAGATTGAATACCGGGGAGGGGGGTACTAGATTTGTGAGATgctaaagtt
cgaaaatcgactcctagagagactgaatttcgaaaattctttcacttttt
tggctttttgccacccttagagagactatttcaaaaaaatttaaatttta
gtccacatttcaagaatttaggacccttttagggaaaaagtgacccttat
gACTCGCAGCATATAGCCTAAATACCCCCTTGGATTAGATATGGTctctt
atcaaaaatatttaaaaaaagtccaaaCACATTTGAAATTAATTTAACTA
ACGATTTCGGCATCAAAAGTCATGATATAGCGCATATCATTATATCTTGG
TTGAGCAGACATCCTCAATAATTCCACTGTTCTCAAATCTCCAGACTTTA
CTCTAGCCTGATCTGTTGTTAAACTCAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028089XLOC_028089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044457-exon-sc0005603-1491911889:3774..4204TCONS_00044457-exon-sc0005603-1491911889:3774..4204Clytia hemisphaericaexon
TCONS_00044457-exon-sc0005603-1510915933:3774..4204TCONS_00044457-exon-sc0005603-1510915933:3774..4204Clytia hemisphaericaexon
TCONS_00044457-exon-sc0005603-1575043694:3774..4204TCONS_00044457-exon-sc0005603-1575043694:3774..4204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005603supercontigsc0005603:3774..4204 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.180945	0.177026	0	0	0	0	0	0	0	0	0.106284	0.110377	0.18149	0	1.07972	2.09039	0	0	2.00867	1.80879	3.48146	2.99856	4.28951	2.9095	2.41044	1.8709	0.177376	0.180718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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