TCONS_00044423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044423
Unique NameTCONS_00044423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044423 ID=TCONS_00044423|Name=TCONS_00044423|organism=Clytia hemisphaerica|type=transcript|length=268bp
TTCGATTGGGCTCGATTGTCCGATCGATTACTTCAATTGAGTTTGATCGG
GTTCAGTTGATTCGATCAATCGTTTCCGATTGGCTTAGACTTAAATCTAG
GCTTTCATTGTCGTAGCGTAGAAGGAATAGATCTAGACTATTTACCTCAT
TGGCCAGcgttggccctttttacgccgaccCCTTTATTGCTGGCCCTTAT
TTATTACGACAGCGAcgaaaaaataacgccaataagagcTGACGTAAAGG
GAGCCGATAAGGGTAGAA
Run BLAST on NCBI

transcript from alignment at sc0005548:33..300

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044423 ID=TCONS_00044423|Name=TCONS_00044423|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0005548:33..300 (Clytia hemisphaerica)
TTCTACCCTTATCGGCTCCCTTTACGTCAgctcttattggcgttattttt
tcgTCGCTGTCGTAATAAATAAGGGCCAGCAATAAAGGggtcggcgtaaa
aagggccaacgCTGGCCAATGAGGTAAATAGTCTAGATCTATTCCTTCTA
CGCTACGACAATGAAAGCCTAGATTTAAGTCTAAGCCAATCGGAAACGAT
TGATCGAATCAACTGAACCCGATCAAACTCAATTGAAGTAATCGATCGGA
CAATCGAGCCCAATCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028055XLOC_028055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044423-exon-sc0005548-1491911889:33..300TCONS_00044423-exon-sc0005548-1491911889:33..300Clytia hemisphaericaexon
TCONS_00044423-exon-sc0005548-1510915933:33..300TCONS_00044423-exon-sc0005548-1510915933:33..300Clytia hemisphaericaexon
TCONS_00044423-exon-sc0005548-1575043694:33..300TCONS_00044423-exon-sc0005548-1575043694:33..300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005548supercontigsc0005548:33..300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.646011	5.32442	1.86441	2.9991	3.50965	0.491438	1.82618	3.82274	3.10718	1.16357	5.9536	0.662302	1.77688	0.437794	3.5898	0	0.96552	2.52542	1.65017	0.668667	0	6.26139	6.14696	0	2.56026	0	0.659485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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