TCONS_00044419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044419
Unique NameTCONS_00044419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044419 ID=TCONS_00044419|Name=TCONS_00044419|organism=Clytia hemisphaerica|type=transcript|length=799bp
CAGCCATAATAACTTATAAATTCTCCCAAATATCAAAACGTCAAACTTTT
ACTCAATCAGAtaaaaacgcaacaaaattttgtcaaaaagtgcttataaa
aaattcgtaaaacacgtgtcaaaagttaaaagtatgcaaaaatatcacgt
gattaaattttctcaaaatgtccACCCGGCTGAAAAACAACCGGTAAAAA
ATTTCACACACgaatgaaaatggtaaaaacaATAAACAACCAGTGGACAG
TTGTGCTTGATATCAATTATAATCAAAGCTTccgaaaaaggaaaattttc
acaCCAAAATGTAGCACTCAAATAAAGACGGCTGAAAAATTCAATTCATA
AAATAATCACACAAAGCTTTtggcaattaaaaaaaattactcacCAAAAT
GTTTCTCACTCAAAAGACAGCTGCCGAACCAATTCATCAAAAAGCACGCT
ATGACAATTCCTATGTCAACACTAACTTGTGCACGAGGGCaacaaataaa
aactttaaaaatcccGTAAATCACAAAAAATGCATGAAACCAAATTTCAG
CAACAACACTATCATTTAAAAAGAACTCTCCCGTACCACAGACGTTGAAA
ATTTATATGagaaatacttttaaaaatcctTTGACTGATTTAAAAGAACG
ACTATTAAGCCAAGACCATCACAGCGAAAAAACACGCaaagaagaaaatg
taaaaaatttttgaaaagaaagactcaataaaaacaaaagcaatAACCTT
TACTTAGCCTATGGCCTTCAATACCGCTAAGACTCAAAGATTAATATCA
Run BLAST on NCBI

transcript from alignment at sc0005540:3502..4300

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044419 ID=TCONS_00044419|Name=TCONS_00044419|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at sc0005540:3502..4300 (Clytia hemisphaerica)
TGATATTAATCTTTGAGTCTTAGCGGTATTGAAGGCCATAGGCTAAGTAA
AGGTTattgcttttgtttttattgagtctttcttttcaaaaattttttac
attttcttctttGCGTGTTTTTTCGCTGTGATGGTCTTGGCTTAATAGTC
GTTCTTTTAAATCAGTCAAaggatttttaaaagtatttctCATATAAATT
TTCAACGTCTGTGGTACGGGAGAGTTCTTTTTAAATGATAGTGTTGTTGC
TGAAATTTGGTTTCATGCATTTTTTGTGATTTACgggatttttaaagttt
ttatttgttGCCCTCGTGCACAAGTTAGTGTTGACATAGGAATTGTCATA
GCGTGCTTTTTGATGAATTGGTTCGGCAGCTGTCTTTTGAGTGAGAAACA
TTTTGgtgagtaattttttttaattgccaAAAGCTTTGTGTGATTATTTT
ATGAATTGAATTTTTCAGCCGTCTTTATTTGAGTGCTACATTTTGGtgtg
aaaattttcctttttcggAAGCTTTGATTATAATTGATATCAAGCACAAC
TGTCCACTGGTTGTTTATtgtttttaccattttcattcGTGTGTGAAATT
TTTTACCGGTTGTTTTTCAGCCGGGTggacattttgagaaaatttaatca
cgtgatatttttgcatacttttaacttttgacacgtgttttacgaatttt
ttataagcactttttgacaaaattttgttgcgtttttaTCTGATTGAGTA
AAAGTTTGACGTTTTGATATTTGGGAGAATTTATAAGTTATTATGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028051XLOC_028051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044419-exon-sc0005540-1491911889:3502..4300TCONS_00044419-exon-sc0005540-1491911889:3502..4300Clytia hemisphaericaexon
TCONS_00044419-exon-sc0005540-1510915933:3502..4300TCONS_00044419-exon-sc0005540-1510915933:3502..4300Clytia hemisphaericaexon
TCONS_00044419-exon-sc0005540-1575043694:3502..4300TCONS_00044419-exon-sc0005540-1575043694:3502..4300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005540supercontigsc0005540:3502..4300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365972	0.175914	0.0680843	0	10.2215	4.87261	0.995333	0.976658	0.0506719	0.109804	0	0	0.0399917	0	0	0	0	0	0	0	0	0	0	0.151212	0.193682	0.49609	0	0	0.285136	0.478798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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