TCONS_00044412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044412
Unique NameTCONS_00044412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044412 ID=TCONS_00044412|Name=TCONS_00044412|organism=Clytia hemisphaerica|type=transcript|length=589bp
GGTTGCGGGCGCGCGCACCGCCGTGTTGGCTTGTACTGGCGACAGCAAAA
GGGTTGATGTTAGTTTGCGTATTTAAATTTGTATCATGCGTTGAGGTAAC
GAAAGGTTCAGTATAATCCTGCATTGAGGTCTCGATAAATTCCGTATGGT
TTTGAATTGCGTGAGTATTGCTTGCGCTGTCGCTTAGATTTTGTATTGAT
CGAGTTTCGGTATTTGTGTGATTGATAACCGTTTGTACTGATTGAATTTC
GCTTGCGCTCGATATTATTGGCAATTCAATACTCTCATTTTGAGACGCGG
GGTCAGGTAAGGAACGCAATTCTCCGAGTAATTGTGATTCATTTACGTAT
AGTTTAGAGAACGCACCGCACATGTCGCTCATTGACGGATTAGAACCAGA
GCCAGAACCCTCCTGGTCACGTGATTTTTCGCGCCATTTTTGAATATCTT
CGCGCTTTTTGGAAGATAGTAACGATGATGGCGGATCATCCTTACGGCTA
TCAAGGTAACGTTCGATTCTTCCGAAACAAGAATTTACGTTGAGAGCGAG
TTCATCGATCCATTCATCGCCGAATCGAGAATCTCCTTC
Run BLAST on NCBI

protein sequence of TCONS_00044412-protein

>TCONS_00044412-protein ID=TCONS_00044412-protein|Name=TCONS_00044412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
EGDSRFGDEWIDELALNVNSCFGRIERYLDSRKDDPPSSLLSSKKREDIQ
KWREKSRDQEGSGSGSNPSMSDMCGAFSKLYVNESQLLGELRSLPDPASQ
NESIELPIISSASEIQSVQTVINHTNTETRSIQNLSDSASNTHAIQNHTE
FIETSMQDYTEPFVTSTHDTNLNTQTNINPFAVASTSQHGGARARN
Run BLAST on NCBI

transcript from alignment at sc0005532:3395..3983

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044412 ID=TCONS_00044412|Name=TCONS_00044412|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0005532:3395..3983 (Clytia hemisphaerica)
GAAGGAGATTCTCGATTCGGCGATGAATGGATCGATGAACTCGCTCTCAA
CGTAAATTCTTGTTTCGGAAGAATCGAACGTTACCTTGATAGCCGTAAGG
ATGATCCGCCATCATCGTTACTATCTTCCAAAAAGCGCGAAGATATTCAA
AAATGGCGCGAAAAATCACGTGACCAGGAGGGTTCTGGCTCTGGTTCTAA
TCCGTCAATGAGCGACATGTGCGGTGCGTTCTCTAAACTATACGTAAATG
AATCACAATTACTCGGAGAATTGCGTTCCTTACCTGACCCCGCGTCTCAA
AATGAGAGTATTGAATTGCCAATAATATCGAGCGCAAGCGAAATTCAATC
AGTACAAACGGTTATCAATCACACAAATACCGAAACTCGATCAATACAAA
ATCTAAGCGACAGCGCAAGCAATACTCACGCAATTCAAAACCATACGGAA
TTTATCGAGACCTCAATGCAGGATTATACTGAACCTTTCGTTACCTCAAC
GCATGATACAAATTTAAATACGCAAACTAACATCAACCCTTTTGCTGTCG
CCAGTACAAGCCAACACGGCGGTGCGCGCGCCCGCAACC

Coding sequence (CDS) from alignment at sc0005532:3395..3983

>TCONS_00044412 ID=TCONS_00044412|Name=TCONS_00044412|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0005532:3395..3983 (Clytia hemisphaerica)
GAAGGAGATTCTCGATTCGGCGATGAATGGATCGATGAACTCGCTCTCAA
CGTAAATTCTTGTTTCGGAAGAATCGAACGTTACCTTGATAGCCGTAAGG
ATGATCCGCCATCATCGTTACTATCTTCCAAAAAGCGCGAAGATATTCAA
AAATGGCGCGAAAAATCACGTGACCAGGAGGGTTCTGGCTCTGGTTCTAA
TCCGTCAATGAGCGACATGTGCGGTGCGTTCTCTAAACTATACGTAAATG
AATCACAATTACTCGGAGAATTGCGTTCCTTACCTGACCCCGCGTCTCAA
AATGAGAGTATTGAATTGCCAATAATATCGAGCGCAAGCGAAATTCAATC
AGTACAAACGGTTATCAATCACACAAATACCGAAACTCGATCAATACAAA
ATCTAAGCGACAGCGCAAGCAATACTCACGCAATTCAAAACCATACGGAA
TTTATCGAGACCTCAATGCAGGATTATACTGAACCTTTCGTTACCTCAAC
GCATGATACAAATTTAAATACGCAAACTAACATCAACCCTTTTGCTGTCG
CCAGTACAAGCCAACACGGCGGTGCGCGCGCCCGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028044XLOC_028044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044412-exon-sc0005532-1491911889:3395..3983TCONS_00044412-exon-sc0005532-1491911889:3395..3983Clytia hemisphaericaexon
TCONS_00044412-exon-sc0005532-1510915933:3395..3983TCONS_00044412-exon-sc0005532-1510915933:3395..3983Clytia hemisphaericaexon
TCONS_00044412-exon-sc0005532-1575043694:3395..3983TCONS_00044412-exon-sc0005532-1575043694:3395..3983Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044412-proteinTCONS_00044412-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005532supercontigsc0005532:3395..3983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.557288	0.820282	0.391857	0.0201437	0.125905	0	0.270394	0.224745	0	0	0	0.497431	0	0	0.0530143	0	0.280347	0.166523	0	0.258336	0	0	0	0.181843	0.300717	0.268383	0.256037	0.136625	0.103625	0.211155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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