|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044409 ID=TCONS_00044409|Name=TCONS_00044409|organism=Clytia hemisphaerica|type=transcript|length=674bp
CTTGTTATTGAATGGCATCGAGAAAATGATTGGATCAAGTTAGGACCATA
TTTGGCAGATAGGACCCCTCTTCGTGTTGGTGTCATCAACGAGGAGTTCT
GTTCTCTTGTGAAAACTGAGGATTTTTCTATAGATGTTTGcggagaaaaa
ccattttgtattTCCTCGCCATCATCAAACCAGATGACTTGTGGTCAATG
TGGCTTGAGATACCACATCACATGTGTCGGGGACGAGGATGAATGTGGGT
GTGNTCATCAAACCAGATGACTTGTGGTCAATGTGGCTTGAGATACCACA
TCACATGTGTCGGGGACGAGGATGAATGTGGGTGTAGGAAAATTGGATGG
TTAAAAGAAAGaatcaaaaatgacattcttgACGTCAAAAGATTTGAACG
AAATACCGAAAAATCAGCTCATATTGCAAGGaGCTTTATCGAGGATATTT
GCCAAGGCAATATGAAAACAAGACGATCCGTTTCTATTGGTTCCCTACCC
TTAGatgtaaacaaattttttacttgtatGATGTTAAAAGAAtcaCGGCA
GCATGCGGTCACGTTCGTCACGCAACTCATATTGAACGATGGGAATTTGC
AACGTGTTgttaaagaattttttccaGAATCGGAACTTGCAAACGTGATT
GCAGATTGCCTTGTACCTGATGTA Run BLAST on NCBI protein sequence of TCONS_00044409-protein >TCONS_00044409-protein ID=TCONS_00044409-protein|Name=TCONS_00044409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MWVXSSNQMTCGQCGLRYHITCVGDEDECGCRKIGWLKERIKNDILDVKR
FERNTEKSAHIARSFIEDICQGNMKTRRSVSIGSLPLDVNKFFTCMMLKE
SRQHAVTFVTQLILNDGNLQRVVKEFFPESELANVIADCLVPDV Run BLAST on NCBI transcript from alignment at sc0005529:2683..4316- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044409 ID=TCONS_00044409|Name=TCONS_00044409|organism=Clytia hemisphaerica|type=transcript|length=1634bp|location=Sequence derived from alignment at sc0005529:2683..4316- (Clytia hemisphaerica)
CTTGTTATTGAATGGCATCGAGAAAATGATTGGATCAAGTTAGGACCATA
TTTGGCAGATAGGACCCCTCTTCGTGTTGGTGTCATCAACGAGGAGTTCT
GTTCTCTTGTGAAAACTGAGGATTTTTCTATAGATGTTTGCGGAGAAAAA
CCATTTTGTATTTCCTCGCCATCATCAAACCAGATGACTTGTGGTCAATG
TGGCTTGAGATACCACATCACATGTGTCGGGGACGAGGATGAATGTGGGT
GTGNTCATCAAACCAGATGACTTGTGGTCAATGTGGCTTGAGATACCACA
TCACATGTGTCGGGGACGAGGATGAATGTGGGTGTAGGAAAATTGGATGG
TTAAAAGAAAGGTACTTATCAGTTAATTTAGCTAATATAATAAATAGCCA
GCTATTTTTCATTTTTATATTCTGAGAAGAAAATCGGCTTACACTGTATT
TTGTAAATCCCGTAATTCACAGTTATCAACAAGGGAATCTTTTCACTTTG
CCGATGTTAGAAAAAGTGACGTCAAACTAGAGCAGCTTTGTTTCGGGATA
AATACAGGGTGAACATTTCTAGTTTTCATGCAAAATTCTGAAAACTAAAA
ATCAATCTAGAGAAAAAGATATTTTGCTTGGGAGCTTTGAATTTCTGCTC
AGAATTATATTTGAAATTCAAGGAATCTAAGTTTTTTAAATTTTATTTTA
GAATCAAAAATGACATTCTTGACGTCAAAAGATTTGAACGAAATACCGAA
AAATCAGCTCATATTGCAAGGGTATCTTGACTTCCTTTTCAATTTCATGC
TAAGTGTGACAAGGAGTGTGTTTTTTATTGGAAGCATCAATAAATGTTTT
TCTTATTTAATAAAAAAATGGATGTATGAGTTATTTAATTTGAAAGAGAA
AAAGAGTCTTAAGTTTGGGTTTCAATTACAGATGAACCAGATGAAACATG
AACATTAAAAAGGAGATAGATTCTATTGCTTACATATATTTTTTAATTCA
GAGCTTTATCGAGGATATTTGCCAAGGCAATATGAAAACAAGACGATCCG
TTTCTATTGGTTCCCTACCCTTAGATGTAAACAAATTTTTTACTTGTATG
ATGTTAAAAGAATCAGTAAGTTTTTTTTTTACCATCCTTTAATTGCAAAT
TAAGAACAGTTTTCTTGAATTAATTTTAATTCTCATAATTGCACTAATTC
ATAACCCAACTTTCATAAATGTCATGTTAATCAGTATAAATGCGAAATGT
TTCATCAAGAATATTTATACTGGTATGATTAATCTTTTCTGTCCACTTTT
AACAAAAAGAAGTAGGCTACATTTTAAACTGGGGGCGCCACAGGTTAGGT
AAGTAAAATATCTTTTTCGGGCTAAATGTCAAAATAATTAGTACAGGTTG
TTATATTAAAATAAAACCTCTAACCTTTGGTACCCCCGGTTTAAAATTTG
GCCTACTTTTTGACAAAAGTGGGCAGATTTGATAAAAAAATTATTCTGTT
TCCAGCGGCAGCATGCGGTCACGTTCGTCACGCAACTCATATTGAACGAT
GGGAATTTGCAACGTGTTGTTAAAGAATTTTTTCCAGAATCGGAACTTGC
AAACGTGATTGCAGATTGCCTTGTACCTGATGTA Coding sequence (CDS) from alignment at sc0005529:2683..4316- >TCONS_00044409 ID=TCONS_00044409|Name=TCONS_00044409|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0005529:2683..4316- (Clytia hemisphaerica)
CGGCAGCATGCGGTCACGTTCGTCACGCAACTCATATTGAACGATGGGAA
TTTGCAACGTGTTGTTAAAGAATTTTTTCCAGAATCGGAACTTGCAAACG
TGATTGCAGATTGCCTTGTACCTGATGTAAGCTTTATCGAGGATATTTGC
CAAGGCAATATGAAAACAAGACGATCCGTTTCTATTGGTTCCCTACCCTT
AGATGTAAACAAATTTTTTACTTGTATGATGTTAAAAGAATCAAATCAAA
AATGACATTCTTGACGTCAAAAGATTTGAACGAAATACCGAAAAATCAGC
TCATATTGCAAGGATGTGGGTGTGNTCATCAAACCAGATGACTTGTGGTC
AATGTGGCTTGAGATACCACATCACATGTGTCGGGGACGAGGATGAATGT
GGGTGTAGGAAAATTGGATGGTTAAAAGAAAGCGGCAGCATGCGGTCACG
TTCGTCACGCAACTCATATTGAACGATGGGAATTTGCAACGTGTTGTTAA
AGAATTTTTTCCAGAATCGGAACTTGCAAACGTGATTGCAGATTGCCTTG
TACCTGATGTAAGCTTTATCGAGGATATTTGCCAAGGCAATATGAAAACA
AGACGATCCGTTTCTATTGGTTCCCTACCCTTAGATGTAAACAAATTTTT
TACTTGTATGATGTTAAAAGAATCAAATCAAAAATGACATTCTTGACGTC
AAAAGATTTGAACGAAATACCGAAAAATCAGCTCATATTGCAAGGATGTG
GGTGTGNTCATCAAACCAGATGACTTGTGGTCAATGTGGCTTGAGATACC
ACATCACATGTGTCGGGGACGAGGATGAATGTGGGTGTAGGAAAATTGGA
TGGTTAAAAGAAAGCGGCAGCATGCGGTCACGTTCGTCACGCAACTCATA
TTGAACGATGGGAATTTGCAACGTGTTGTTAAAGAATTTTTTCCAGAATC
GGAACTTGCAAACGTGATTGCAGATTGCCTTGTACCTGATGTAAGCTTTA
TCGAGGATATTTGCCAAGGCAATATGAAAACAAGACGATCCGTTTCTATT
GGTTCCCTACCCTTAGATGTAAACAAATTTTTTACTTGTATGATGTTAAA
AGAATCAAATCAAAAATGACATTCTTGACGTCAAAAGATTTGAACGAAAT
ACCGAAAAATCAGCTCATATTGCAAGGATGTGGGTGTGNTCATCAAACCA
GATGACTTGTGGTCAATGTGGCTTGAGATACCACATCACATGTGTCGGGG
ACGAGGATGAATGTGGGTGTAGGAAAATTGGATGGTTAAAAGAAAGCGGC
AGCATGCGGTCACGTTCGTCACGCAACTCATATTGAACGATGGGAATTTG
CAACGTGTTGTTAAAGAATTTTTTCCAGAATCGGAACTTGCAAACGTGAT
TGCAGATTGCCTTGTACCTGATGTAAGCTTTATCGAGGATATTTGCCAAG
GCAATATGAAAACAAGACGATCCGTTTCTATTGGTTCCCTACCCTTAGAT
GTAAACAAATTTTTTACTTGTATGATGTTAAAAGAATCAAATCAAAAATG
ACATTCTTGACGTCAAAAGATTTGAACGAAATACCGAAAAATCAGCTCAT
ATTGCAAGGATGTGGGTGTGNTCATCAAACCAGATGACTTGTGGTCAATG
TGGCTTGAGATACCACATCACATGTGTCGGGGACGAGGATGAATGTGGGT
GTAGGAAAATTGGATGGTTAAAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044409-exon-sc0005529-1575043694:3956..4316 | TCONS_00044409-exon-sc0005529-1575043694:3956..4316 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1575043694:3546..3615 | TCONS_00044409-exon-sc0005529-1575043694:3546..3615 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1575043694:3202..3315 | TCONS_00044409-exon-sc0005529-1575043694:3202..3315 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1575043694:2683..2811 | TCONS_00044409-exon-sc0005529-1575043694:2683..2811 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1510915933:3956..4316 | TCONS_00044409-exon-sc0005529-1510915933:3956..4316 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1510915933:3546..3615 | TCONS_00044409-exon-sc0005529-1510915933:3546..3615 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1510915933:3202..3315 | TCONS_00044409-exon-sc0005529-1510915933:3202..3315 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1510915933:2683..2811 | TCONS_00044409-exon-sc0005529-1510915933:2683..2811 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1491911889:3956..4316 | TCONS_00044409-exon-sc0005529-1491911889:3956..4316 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1491911889:3546..3615 | TCONS_00044409-exon-sc0005529-1491911889:3546..3615 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1491911889:3202..3315 | TCONS_00044409-exon-sc0005529-1491911889:3202..3315 | Clytia hemisphaerica | exon |
| TCONS_00044409-exon-sc0005529-1491911889:2683..2811 | TCONS_00044409-exon-sc0005529-1491911889:2683..2811 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005529 | supercontig | sc0005529:2683..4316 - |
Blast
The following BLAST results are available for this feature:
|
