TCONS_00044407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044407
Unique NameTCONS_00044407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044407 ID=TCONS_00044407|Name=TCONS_00044407|organism=Clytia hemisphaerica|type=transcript|length=503bp
tgcaatttttgttttgacctCGATAGTTGAATTTGGAGTTTGTCAAGTCA
AGTCTTGagtattttttgtcaaaaattgacTGAGAGTGAGAACAAACAAC
GCAAAGGTATTTGAAAACACCAAGAGAAGTACTTCTTGAAAATTATTTCC
GTCTAGCTCAAGAATGGCTGAACATGCTATTGCTGAAAAGGTTCAGAGGA
TCTTACAAAAGGGGTATGGCGAAATCTTGAAAGGAACAAATCAAGATGGT
AGCCAAAGCAGGGAAGATAAAGAATTAAAGCTCGAATCACATGACGATAG
AGCACGTCAAATATGCGCCATTTTGAAATCGAATGTTTTCGAacaataca
aaaataacaacCAATCAGATTTATCCTTGATTTatggaaaatatgatgac
agGCAACATTCGCATTTGCTTTCCCCGTTGGAATGGGATCGCTCTCAAGA
GGAATGGAAACTACCATTTGGATCGAATTTCAAGCGACCGCACTTCATTT
TCT
Run BLAST on NCBI

protein sequence of TCONS_00044407-protein

>TCONS_00044407-protein ID=TCONS_00044407-protein|Name=TCONS_00044407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MAEHAIAEKVQRILQKGYGEILKGTNQDGSQSREDKELKLESHDDRARQI
CAILKSNVFEQYKNNNQSDLSLIYGKYDDRQHSHLLSPLEWDRSQEEWKL
PFGSNFKRPHFIF
Run BLAST on NCBI

transcript from alignment at sc0005527:1..503

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044407 ID=TCONS_00044407|Name=TCONS_00044407|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at sc0005527:1..503 (Clytia hemisphaerica)
AGAAAATGAAGTGCGGTCGCTTGAAATTCGATCCAAATGGTAGTTTCCAT
TCCTCTTGAGAGCGATCCCATTCCAACGGGGAAAGCAAATGCGAATGTTG
CctgtcatcatattttccatAAATCAAGGATAAATCTGATTGgttgttat
ttttgtattgtTCGAAAACATTCGATTTCAAAATGGCGCATATTTGACGT
GCTCTATCGTCATGTGATTCGAGCTTTAATTCTTTATCTTCCCTGCTTTG
GCTACCATCTTGATTTGTTCCTTTCAAGATTTCGCCATACCCCTTTTGTA
AGATCCTCTGAACCTTTTCAGCAATAGCATGTTCAGCCATTCTTGAGCTA
GACGGAAATAATTTTCAAGAAGTACTTCTCTTGGTGTTTTCAAATACCTT
TGCGTTGTTTGTTCTCACTCTCAgtcaatttttgacaaaaaatactCAAG
ACTTGACTTGACAAACTCCAAATTCAACTATCGaggtcaaaacaaaaatt
gca

Coding sequence (CDS) from alignment at sc0005527:1..503

>TCONS_00044407 ID=TCONS_00044407|Name=TCONS_00044407|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0005527:1..503 (Clytia hemisphaerica)
GAAAATGAAGTGCGGTCGCTTGAAATTCGATCCAAATGGTAGTTTCCATT
CCTCTTGAGAGCGATCCCATTCCAACGGGGAAAGCAAATGCGAATGTTGC
ctgtcatcatattttccatAAATCAAGGATAAATCTGATTGgttgttatt
tttgtattgtTCGAAAACATTCGATTTCAAAATGGCGCATATTTGACGTG
CTCTATCGTCATGTGATTCGAGCTTTAATTCTTTATCTTCCCTGCTTTGG
CTACCATCTTGATTTGTTCCTTTCAAGATTTCGCCATACCCCTTTTGTAA
GATCCTCTGAACCTTTTCAGCAATAGCATGTTCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028039XLOC_028039Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044407-proteinTCONS_00044407-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044407-exon-sc0005527-1491911889:1..503TCONS_00044407-exon-sc0005527-1491911889:1..503Clytia hemisphaericaexon
TCONS_00044407-exon-sc0005527-1510915933:1..503TCONS_00044407-exon-sc0005527-1510915933:1..503Clytia hemisphaericaexon
TCONS_00044407-exon-sc0005527-1575043694:1..503TCONS_00044407-exon-sc0005527-1575043694:1..503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005527supercontigsc0005527:1..503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.155144	0	0.206709	0.125958	0.250185	0.418682	6.66397	4.0303	0.242737	0	0	0.0958019	4.85433	11.5392	0.696718	0	0.144932	0.283091	1.51315	3.41908	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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