TCONS_00044404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044404
Unique NameTCONS_00044404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044404 ID=TCONS_00044404|Name=TCONS_00044404|organism=Clytia hemisphaerica|type=transcript|length=682bp
AATACGTGATATTCTTATTCTAGGTACAAGATGGACTCAGGAAATAGTAT
GGTGCTTAAAAAACAACATGGaccttgaaaaagccttgtCGACAAATTTG
AACGTCCGAATTCCAATGTTATGTGATGACTTCTTTGCTAACGACTACGT
TGATCCACAAGTCAGCTCATTTGAATTTGTAAAGAATATGGAAAGACCAA
GAATTGTGCACACTCATCTAATGTACGATATGTTACCGAGAGATTTACTA
GAGAAAAAAATCAAGATGATCAACGTTATTCGAAATCCAAGAGATGTAAT
CATATCTTATCTCAACCATTTGAGAATATTGCATGGGAGATTTGCTAACA
CTGCTTGATTTATTCTTAAAAGATTTAGGACCGCATTGGGGTCCTTATTT
CAAACATGTTTTAAGTTATTGGAACAAGAAATCAGAGCTACCAAATTTGT
TGATTACAAGGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAA
AGAATTGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACTGAG
ATTGTGTGACCatgtatcttttgaaaaaatgaaagctAATCCTATGGTTA
ACAAGGACGAATCTTTTGAGGAAAGGAAAAAAGCGATGAATAATGGTTAT
GCTGGCAAATTCATTAACAAAGGTAAAAGTGG
Run BLAST on NCBI

protein sequence of TCONS_00044404-protein

>TCONS_00044404-protein ID=TCONS_00044404-protein|Name=TCONS_00044404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
IRDILILGTRWTQEIVWCLKNNMDLEKALSTNLNVRIPMLCDDFFANDYV
DPQVSSFEFVKNMERPRIVHTHLMYDMLPRDLLEKKIKMINVIRNPRDVI
ISYLNHLRILHGRFANTA
Run BLAST on NCBI

transcript from alignment at sc0005525:1047..3740+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044404 ID=TCONS_00044404|Name=TCONS_00044404|organism=Clytia hemisphaerica|type=transcript|length=2694bp|location=Sequence derived from alignment at sc0005525:1047..3740+ (Clytia hemisphaerica)
AATACGTGATATTCTTATTCTAGGTACAAGATGGACTCAGGAAATAGTAT
GGTGCTTAAAAAACAACATGGaccttgaaaaagccttgtCGACAAATTTG
AACGTCCGAATTCCAATGTTATGGTATGTCAAATTAATAAGATTTATATT
TTTAAGTTAAGTTTAAGTTTAGTTAACTTTATGCTCTTAAACATGAATAT
GTTGTGAATTAGTTTTAATGTGgtacttctgaaaaccaatAGACCACTCA
AAATAGGTTTGGCGAATGGCGTTTTAAATCACCATGCTTAGACACCATAA
AGTCGGCCAGTGAGTAACCCACATTGAGCTTCTTCTCGACAAGGCAAACT
AGGTTTGGATGCGGTCCCAACTTGGGacagctggagtttttacaagctct
tatttgatttggttggtcgttaagatgtaataaaagaatcttgttacttt
tttttctaaagaacgcgtcatctctatcactttaaatgaccaattagtga
agtatcttgtaaaaactccagctcatccccccAACTTGCGGTCTAAAATC
CTCATTAGAAATTTTTGTCTTTCTAGTGATGACTTCTTTGCTAACGACTA
CGTTGATCCACAAGTCAGCTCATTTGAATTTGTAAAGAATATGGAAAGAC
CAAGAATTGTGCACACTCATCTAATGTACGATATGTTACCGAGAGATTTA
CTAGAGAAAAAAATCAAGGTATGTTCGATTTGTTTATTTGTTAAAACACT
ACCCAGAAAATTTTTCTTAAGTATAACAAAAACCAGACAATTAGATCAGG
CTGGGTAAAAGTCTTTGATATTTATATACAGGATACTATACTGTTAATCT
CTTGGAGGAAGTAACGTCAGCTGCATTTTGACGCCAATTTCTGATCGACT
TTCCAGAGTTTAGGTTGAGATACAAATTGAGCCTTTGATTACATTAAGGG
AACTATTTTTTATGGGTGCGTAGTTTTGCGGAACTTAATTTTGCGGATTT
ATGACTTGAAAGAAAATTAGAGCCGTTCTGTATATAATTCGACCTTTGTT
TTTCGCGTTTGAAAACTTTTGCGGGAACTTAATTTTGTGGTTTTAGGCCA
ATTTGGTAGATTAAACATACTAGTATTGTTGCTTTTAAGGGGTATCTACT
GACTTGTATTGAATTTCTCATCAAATTTTGGAGTTTCAGGGGTTTAGCCT
GTGATATCAGTTTCTTCGGTTTTTCGAAGGTTTTATTCGTGAACCCAAGG
CGAAATATATTTCTGATGGGTTACTATTTGAAAAAGAGCAAAGGGGTGAT
TGCATCGTATGTGACGAATCCTAATAGTTGGCCTATTTTACCCCCTGTAT
TTAGGGCTGGAGAATCGGGTATATGCAGACCGAAAACCGACACTTAGAGA
GACTAAATTTTGGCGAAAAAGTGAACCTTAGAGAGACAAAATTGGTGAAA
AAGTGACCCTCAGAAACTGTTTCGAAAATTCTCTTGACCTTATGAGACTT
TAAAGTTTTCGTGCTTTTCGCTTCCTTAGAGAGACTGTGAAACGTAAAAA
ACCCGACCCTCAGAGAGACTATTTCGGCTTAATGTTATTTTTGTAACCCT
TAGAGACTTTGGAAGGTGAAAAAGCCTACCTTTACCGTCCGCACGTTCCA
ACACATATTTTTGTCTAAGTACTCCCAGGAGCTTTACCATTTTAATTCTT
ACTGATTTCTACCTTTAGATGATCAACGTTATTCGAAATCCAAGAGATGT
AATCATATCTTATCTCAACCATTTGAGAATATTGCATGGGAGATTTGCTA
ACACTGCTTGATTTATTCTTAAAAGATTTAGGACCGCATTGGGGTCCTTA
TTTCAAACATGTTTTAAGTTATTGGAACAAGAAATCAGAGCTACCAAATT
TGTTGATTACAAGGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATT
AAAAGAATTGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACT
GAGATTGTGTGACCatgtatcttttgaaaaaatgaaagctAATCCTATGG
TTAACAAGGACGAATCTTTTGAGGTAAGTTAATTTCGTTAATTCTTATTT
TAGGAATCAAAtcgggcttttccagaaaactcTACAACCCCTGTTAAGGA
gttccaaccttttgtgacctaccccatTAGAATTCCAACCGGAAATACTG
TAACCCCCCTTAAATTTTTATAGGATTTGAAACACTACCTCAATGGAATT
CTGCTTATTTTTTGACGGATTTTAATAGACCCCTATGTGGAATTCTACCT
CATTTCCAACCCTACCCCCTGTAACAGAACTGGACCTTCCCATCAGGGAG
TGTGTagtttttttctagaaaagcccaTTTGGTCTAAACGCAAATTCTGC
TCTCGAAAAAGCCGATCTCTTTCCCGTTCGGATACAAACGACCCCTGACC
GCATANttttttctagaaaagcccaTTTGGTCTAAACGCAAATTCTGCTC
TCGAAAAAGCCGATCTCTTTCCCGTTCGGATACAAACGACCCCTGACCGC
ATAATCACGGTTGAAAAGGTTTAATTTCGAAACTAATCTCGCATAGTTGT
AGCCATTCCACAAATCTTCCATATACTTTTAGGAAAGGAAAAAAGCGATG
AATAATGGTTATGCTGGCAAATTCATTAACAAAGGTAAAAGTGG

Coding sequence (CDS) from alignment at sc0005525:1047..3740+

>TCONS_00044404 ID=TCONS_00044404|Name=TCONS_00044404|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0005525:1047..3740+ (Clytia hemisphaerica)
ATACGTGATATTCTTATTCTAGGTACAAGATGGACTCAGGAAATAGTATG
GTGCTTAAAAAACAACATGGaccttgaaaaagccttgtCGACAAATTTGA
ACGTCCGAATTCCAATGTTATGTGATGACTTCTTTGCTAACGACTACGTT
GATCCACAAGTCAGCTCATTTGAATTTGTAAAGAATATGGAAAGACCAAG
AATTGTGCACACTCATCTAATGTACGATATGTTACCGAGAGATTTACTAG
AGAAAAAAATCAAGATGATCAACGTTATTCGAAATCCAAGAGATGTAATC
ATATCTTATCTCAACCATTTGAGAATATTGCATGGGAGATTTGCTAACAC
TGCTTGAATACGTGATATTCTTATTCTAGGTACAAGATGGACTCAGGAAA
TAGTATGGTGCTTAAAAAACAACATGGaccttgaaaaagccttgtCGACA
AATTTGAACGTCCGAATTCCAATGTTATGTGATGACTTCTTTGCTAACGA
CTACGTTGATCCACAAGTCAGCTCATTTGAATTTGTAAAGAATATGGAAA
GACCAAGAATTGTGCACACTCATCTAATGTACGATATGTTACCGAGAGAT
TTACTAGAGAAAAAAATCAAGATGATCAACGTTATTCGAAATCCAAGAGA
TGTAATCATATCTTATCTCAACCATTTGAGAATATTGCATGGGAGATTTG
CTAACACTGCTTGAATACGTGATATTCTTATTCTAGGTACAAGATGGACT
CAGGAAATAGTATGGTGCTTAAAAAACAACATGGaccttgaaaaagcctt
gtCGACAAATTTGAACGTCCGAATTCCAATGTTATGTGATGACTTCTTTG
CTAACGACTACGTTGATCCACAAGTCAGCTCATTTGAATTTGTAAAGAAT
ATGGAAAGACCAAGAATTGTGCACACTCATCTAATGTACGATATGTTACC
GAGAGATTTACTAGAGAAAAAAATCAAGATGATCAACGTTATTCGAAATC
CAAGAGATGTAATCATATCTTATCTCAACCATTTGAGAATATTGCATGGG
AGATTTGCTAACACTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028036XLOC_028036Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044404-proteinTCONS_00044404-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044404-exon-sc0005525-1491911889:1047..1169TCONS_00044404-exon-sc0005525-1491911889:1047..1169Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1510915933:1047..1169TCONS_00044404-exon-sc0005525-1510915933:1047..1169Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1575043694:1047..1169TCONS_00044404-exon-sc0005525-1575043694:1047..1169Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1491911889:1623..1764TCONS_00044404-exon-sc0005525-1491911889:1623..1764Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1510915933:1623..1764TCONS_00044404-exon-sc0005525-1510915933:1623..1764Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1575043694:1623..1764TCONS_00044404-exon-sc0005525-1575043694:1623..1764Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1491911889:2765..3119TCONS_00044404-exon-sc0005525-1491911889:2765..3119Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1510915933:2765..3119TCONS_00044404-exon-sc0005525-1510915933:2765..3119Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1575043694:2765..3119TCONS_00044404-exon-sc0005525-1575043694:2765..3119Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1491911889:3679..3740TCONS_00044404-exon-sc0005525-1491911889:3679..3740Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1510915933:3679..3740TCONS_00044404-exon-sc0005525-1510915933:3679..3740Clytia hemisphaericaexon
TCONS_00044404-exon-sc0005525-1575043694:3679..3740TCONS_00044404-exon-sc0005525-1575043694:3679..3740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005525supercontigsc0005525:1047..3740 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
383.728	363.996	280.052	266.18	21.0037	15.1235	62.3958	39.6884	7.15344	21.7717	14.2495	3.79117	0.0251216	0.269103	0	0	30.5712	45.3254	0	0.0834347	186.301	160.527	167.478	155.483	4.67423	3.84297	7.86849	9.44656	53.4454	70.945
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000863Sulfotransferase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008146 sulfotransferase activity
Blast
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BLAST of TCONS_00044404 vs. Swiss-Prot (Human)
Match: ST1B1 (Sulfotransferase family cytosolic 1B member 1 OS=Homo sapiens GN=SULT1B1 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 2.863e-22
Identity = 45/136 (33.09%), Postives = 67/136 (49.26%), Query Frame = 2 
Query:   23 GTRWTQEIVWCLKNNMDLEKALSTNLNVRIPMLCDDFFANDYVDP--QVSSFEFVKNMERPRIVHTHLMYDMLPRDLLEKKIKMINVIRNPRDVIISY-----LNHLRILHGRFANTA*FILKRFRT---ALGSLF 400
            GT W  EI+  + N+ D+EK     +  ++PML       +   P  + S  E ++    PRIV THL  D+LP+   E   KMI + RN +DV +SY     +N+L+   G +       L++F T   A GS F
Sbjct:   50 GTTWVSEIIDMILNDGDIEKCKRGFITEKVPML-------EMTLPGLRTSGIEQLEKNPSPRIVKTHLPTDLLPKSFWENNCKMIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEE----YLEKFLTGKVAYGSWF 174

HSP 2 Score: 61.2326 bits (147), Expect = 2.863e-22
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  387 WGPYFKHVLSYWNKKSELPNLLITRYEEMQADLPKVIKRIASFLEVTISDEDVLRLCDHVSFEKMKANPMVN 602
            +G +F HV ++W KK E P +L   YE+M+ +  + IK+I  FLE  ++DE + R+  H SFE MK NP+VN
Sbjct:  170 YGSWFTHVKNWWKKKEEHP-ILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVN 240
The following BLAST results are available for this feature:
BLAST of TCONS_00044404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1B12.863e-2233.09Sulfotransferase family cytosolic 1B member 1 OS=H... [more]
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