TCONS_00044398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044398
Unique NameTCONS_00044398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044398 ID=TCONS_00044398|Name=TCONS_00044398|organism=Clytia hemisphaerica|type=transcript|length=244bp
CCTGTCAagagttggaaaaaaatcgcgCCCGAAAACATCTTGAAAGTCAT
CAGATGCAAGTGTAAATTGACGTCGAAAAACCCTTGTGGAACCAACCTTT
GCTCctgccggaaaaacggtattaaATGCATGCCAGCATGTGGAAACTGC
CATGGCAATGATTGCAATAATCAACCGGTACGAATGAACGAAGAATACGA
AATCGACGAGAATCAGGACGACGGACAAGATTCGACCCCTGGAG
Run BLAST on NCBI

transcript from alignment at sc0005515:5..360+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044398 ID=TCONS_00044398|Name=TCONS_00044398|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0005515:5..360+ (Clytia hemisphaerica)
CCTGTCAagagttggaaaaaaatcgcgCCCGAAAACATCTTGAAAGTCAT
CAGATGCAAGTGTAAATTGACGTCGAAAAACCCTTGTGGAACCAACCTTT
GCTCctgccggaaaaacggtattaaATGCATGCCAGCATGTGGAAACTGC
CATGGCAATGATTGCAATAATCAACCGGTAATTTACTGTTTTGGCTTTAT
CGATCTAGAGCTACAATGAACTATTACCTTACAATTCAACATCGTTTCCT
ATATTATGCATTagtattattttgtttttgattcacCAGGTACGAATGAA
CGAAGAATACGAAATCGACGAGAATCAGGACGACGGACAAGATTCGACCC
CTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028030XLOC_028030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044398-exon-sc0005515-1491911889:5..181TCONS_00044398-exon-sc0005515-1491911889:5..181Clytia hemisphaericaexon
TCONS_00044398-exon-sc0005515-1510915933:5..181TCONS_00044398-exon-sc0005515-1510915933:5..181Clytia hemisphaericaexon
TCONS_00044398-exon-sc0005515-1575043694:5..181TCONS_00044398-exon-sc0005515-1575043694:5..181Clytia hemisphaericaexon
TCONS_00044398-exon-sc0005515-1491911889:294..360TCONS_00044398-exon-sc0005515-1491911889:294..360Clytia hemisphaericaexon
TCONS_00044398-exon-sc0005515-1510915933:294..360TCONS_00044398-exon-sc0005515-1510915933:294..360Clytia hemisphaericaexon
TCONS_00044398-exon-sc0005515-1575043694:294..360TCONS_00044398-exon-sc0005515-1575043694:294..360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005515supercontigsc0005515:5..360 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.822528	0	0.934351	2.27497	1.79771	1.08443	5.07615	0	3.52169	0	0.561754	1.12195	0.582576	1.43687	0.513994	0	0	1.79328	0.938269	0.815526	0	0.96712	0	8.15048	8.08235	1.15658	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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