TCONS_00044393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044393
Unique NameTCONS_00044393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044393 ID=TCONS_00044393|Name=TCONS_00044393|organism=Clytia hemisphaerica|type=transcript|length=633bp
CGTTATTTCctctatttttttttgacatttgcgagagaaaaatgataaaa
aaagacgaGCTTTGTTCGGACTCGAAAACAACACGAATGGAAAGAAGATG
GCGGATGTAGAAGGAGAAACAGAATATTTGGAACTagaagaaattgattt
tgatgaggATATACCCATTATTGGCGACGTTATACCACAAGATGAAGTCG
ATATTGATATTGTTGTTGATGAAAATGAACTATTTGAGCTTGGAGATCGT
GATGATGATGAAAACATCCATTTCGAAATACCAACTCTTGTATCAGTAGA
TGAAGAAGGTTTGGAGCATGTGAAAGTAGAAAGTTTTGTTGATGACACTA
CAAAGAAATATCCCCAAAGGAAAAGAAATAGTAAAACCAAGAAAGAGAAT
CCTGCAACACTCTCTGAATCNGAAATATCCCCAAAGGAAAAGAAATAGTA
AAACCAAGAAAGAGAATCCTGCAACACTCTCTGAATTCTCCACAATAGTA
GAAAAGACTTTAATTTGTCGGATCTGTTCAAAGATGTACCAGCGAAAATA
TGCCTTCTTAAAACACCAGGCAATTTGTAAGTAAACTTCATGCAAGAAAG
AAAGCTATTCTTGCTTAATGCCGTCAATCCAGC
Run BLAST on NCBI

protein sequence of TCONS_00044393-protein

>TCONS_00044393-protein ID=TCONS_00044393-protein|Name=TCONS_00044393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
AGLTALSKNSFLSCMKFTYKLPGVLRRHIFAGTSLNRSDKLKSFLLLWRI
QRVLQDSLSWFYYFFSFGDIXDSESVAGFSFLVLLFLFLWGYFFVVSSTK
LSTFTCSKPSSSTDTRVGISKWMFSSSSRSPSSNSSFSSTTISISTSSCG
ITSPIMGISSSKSISSSSKYSVSPSTSAIFFPFVLFSSPNKARLFLSFFS
RKCQKKIEEIT
Run BLAST on NCBI

transcript from alignment at sc0005505:3628..4260

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044393 ID=TCONS_00044393|Name=TCONS_00044393|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at sc0005505:3628..4260 (Clytia hemisphaerica)
GCTGGATTGACGGCATTAAGCAAGAATAGCTTTCTTTCTTGCATGAAGTT
TACTTACAAATTGCCTGGTGTTTTAAGAAGGCATATTTTCGCTGGTACAT
CTTTGAACAGATCCGACAAATTAAAGTCTTTTCTACTATTGTGGAGAATT
CAGAGAGTGTTGCAGGATTCTCTTTCTTGGTTTTACTATTTCTTTTCCTT
TGGGGATATTTCNGATTCAGAGAGTGTTGCAGGATTCTCTTTCTTGGTTT
TACTATTTCTTTTCCTTTGGGGATATTTCTTTGTAGTGTCATCAACAAAA
CTTTCTACTTTCACATGCTCCAAACCTTCTTCATCTACTGATACAAGAGT
TGGTATTTCGAAATGGATGTTTTCATCATCATCACGATCTCCAAGCTCAA
ATAGTTCATTTTCATCAACAACAATATCAATATCGACTTCATCTTGTGGT
ATAACGTCGCCAATAATGGGTATATcctcatcaaaatcaatttcttctAG
TTCCAAATATTCTGTTTCTCCTTCTACATCCGCCATCTTCTTTCCATTCG
TGTTGTTTTCGAGTCCGAACAAAGCtcgtctttttttatcatttttctct
cgcaaatgtcaaaaaaaaatagagGAAATAACG

Coding sequence (CDS) from alignment at sc0005505:3628..4260

>TCONS_00044393 ID=TCONS_00044393|Name=TCONS_00044393|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0005505:3628..4260 (Clytia hemisphaerica)
GCTGGATTGACGGCATTAAGCAAGAATAGCTTTCTTTCTTGCATGAAGTT
TACTTACAAATTGCCTGGTGTTTTAAGAAGGCATATTTTCGCTGGTACAT
CTTTGAACAGATCCGACAAATTAAAGTCTTTTCTACTATTGTGGAGAATT
CAGAGAGTGTTGCAGGATTCTCTTTCTTGGTTTTACTATTTCTTTTCCTT
TGGGGATATTTCNGATTCAGAGAGTGTTGCAGGATTCTCTTTCTTGGTTT
TACTATTTCTTTTCCTTTGGGGATATTTCTTTGTAGTGTCATCAACAAAA
CTTTCTACTTTCACATGCTCCAAACCTTCTTCATCTACTGATACAAGAGT
TGGTATTTCGAAATGGATGTTTTCATCATCATCACGATCTCCAAGCTCAA
ATAGTTCATTTTCATCAACAACAATATCAATATCGACTTCATCTTGTGGT
ATAACGTCGCCAATAATGGGTATATcctcatcaaaatcaatttcttctAG
TTCCAAATATTCTGTTTCTCCTTCTACATCCGCCATCTTCTTTCCATTCG
TGTTGTTTTCGAGTCCGAACAAAGCtcgtctttttttatcatttttctct
cgcaaatgtcaaaaaaaaatagagGAAATAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028025XLOC_028025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044393-exon-sc0005505-1491911889:3628..4260TCONS_00044393-exon-sc0005505-1491911889:3628..4260Clytia hemisphaericaexon
TCONS_00044393-exon-sc0005505-1510915933:3628..4260TCONS_00044393-exon-sc0005505-1510915933:3628..4260Clytia hemisphaericaexon
TCONS_00044393-exon-sc0005505-1575043694:3628..4260TCONS_00044393-exon-sc0005505-1575043694:3628..4260Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044393-proteinTCONS_00044393-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005505supercontigsc0005505:3628..4260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0836739	0.407976	0.0947399	0.0926882	5.52911	5.08251	3.33486	3.12205	0.634594	1.92145	0.339092	1.00307	0.333893	0.28896	0.522641	0.764828	0.690951	0.708202	0.444736	0.837692	0.404503	0.355145	0.671572	0.913905	0	0.240532	1.14734	1.10202	0.928715	0.473107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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