TCONS_00044346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044346
Unique NameTCONS_00044346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044346 ID=TCONS_00044346|Name=TCONS_00044346|organism=Clytia hemisphaerica|type=transcript|length=234bp
atgaaaatgaaaattttcagtgGAAAACTCTacaaaaaataaccaaaaag
ctgttttttcaaacaaaaatcaacTACTACAATCCATCTATTTGACCAAA
ACTCATCCAAATGGCATCGGCACCACTATCCGTACTACCCAAACGAAAAG
CTGCTTCCAAAAAAGTCGCACCAAAGGATGAGATCATTATTTGTACCGAA
AATCGCTGCGTCGCTGATAATGATAAGGACTCNN
Run BLAST on NCBI

transcript from alignment at sc0005425:2895..3128

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044346 ID=TCONS_00044346|Name=TCONS_00044346|organism=Clytia hemisphaerica|type=transcript|length=234bp|location=Sequence derived from alignment at sc0005425:2895..3128 (Clytia hemisphaerica)
NNGAGTCCTTATCATTATCAGCGACGCAGCGATTTTCGGTACAAATAATG
ATCTCATCCTTTGGTGCGACTTTTTTGGAAGCAGCTTTTCGTTTGGGTAG
TACGGATAGTGGTGCCGATGCCATTTGGATGAGTTTTGGTCAAATAGATG
GATTGTAGTAgttgatttttgtttgaaaaaacagctttttggttattttt
tgtAGAGTTTTCcactgaaaattttcattttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027979XLOC_027979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044346-exon-sc0005425-1491911889:2895..3128TCONS_00044346-exon-sc0005425-1491911889:2895..3128Clytia hemisphaericaexon
TCONS_00044346-exon-sc0005425-1510915933:2895..3128TCONS_00044346-exon-sc0005425-1510915933:2895..3128Clytia hemisphaericaexon
TCONS_00044346-exon-sc0005425-1575043694:2895..3128TCONS_00044346-exon-sc0005425-1575043694:2895..3128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005425supercontigsc0005425:2895..3128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74329	0	0.448069	0.744935	0	0.67529	1.2736	0	0.83478	0.413065	0	0.659751	0	3.85263	1.12502	0	0.0291254	0.762226	0	1.93688	0	0	0	0	0	0.949229	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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