TCONS_00044345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044345
Unique NameTCONS_00044345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044345 ID=TCONS_00044345|Name=TCONS_00044345|organism=Clytia hemisphaerica|type=transcript|length=328bp
AACACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGTGA
CGTATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGA
TGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTGAT
GAACAGAATCATTATCGACAATGTTTGAAATATCCAACGAAATGTCCAAA
TCAAGGATGCGAAAAAGTATTTCCAAAGAATGCGgttTCTGGTCATCAAA
ACACAGAATGTCTTTTTCAGACAATTAAatgtgaatttgaaaattttggt
tgcAATGTTCAGgttctTCGAAAAGACT
Run BLAST on NCBI

protein sequence of TCONS_00044345-protein

>TCONS_00044345-protein ID=TCONS_00044345-protein|Name=TCONS_00044345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
NTDCPYVEITCRFTGCDVCFLRKAKQQHEQNCPMKEVNCVYCQMAFKESD
EQNHYRQCLKYPTKCPNQGCEKVFPKNAVSGHQNTECLFQTIKCEFENFG
CNVQVLRKD
Run BLAST on NCBI

transcript from alignment at sc0005421:13..4420-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044345 ID=TCONS_00044345|Name=TCONS_00044345|organism=Clytia hemisphaerica|type=transcript|length=4408bp|location=Sequence derived from alignment at sc0005421:13..4420- (Clytia hemisphaerica)
AACACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGTGA
CGTATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGA
TGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTGAT
GAACAGGTAAAATTGCTTTGCTCTAAATATTACAATACAAAGCAACAATG
GCAGTAATCTTGGATAAATTCCGAACTAATCATGCAAGCACAACTAGCAA
ACGTAGAAAAGATCCGATGAAACCAATTTCAGTTTCAATCATAAGTCCCA
GAAAAATTCTAGAAAACCTGATACAGTAAGAAACGATATAATCTGCATAA
GTGATCCTGAGAATGTCAATATGATTGAAAGCTACGCGAGTCTTTCTGTC
CTCATAGGTTAAATGTCATACAAAGCTAAACTTTCATGTTTATGGTCAAT
AGACGAGATGGATAATATAGGGGGGGGCGTACGGGTTTGTCGGTGTGTCG
GTATTGACCCTTTTTTGCATCGGTGTTTCGGTGTTTTAAGTAAAAAGTGT
CAGTATTTCGGTGTTGGACCTGCCTTGCGGTGACGGTAAAATTGATTTTT
TGGGTCGGTATTTCGGTGATTCGAGAAATACTGGCGGNNNNNNNNNNNNN
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TGTTTTAGGAAAATTTTGTCGGTATTACGGTGATTTAAGAAAAATCTGTC
GGTATTTCGGTGTTGGCAACCCTCGTACGCCCCCCACAATATAGATGTTT
AAATCCCCCGTTAACGTGTTTATCAGAATAATCAAAAGCGTGAGATCTGT
AGAACTTTACTGGGAAAAACAATAAATTCGGCACATAGGGGAGAAACTCA
CGTAGTCCTCTGAGCTTTACACACTATCATTTGTGTTTTGAAAAGCTGGT
AAAAACCCATGCCATTTTTTGATAGAACAATATATACTATTGTTTGAAAA
AAATTCTAAAATCTGGATAGAAAAGTACAAACTTTCGGGGAAGAGCTTTC
ACTCCAAATCATTATCGTTTTTGAATGGTAAATTAAATGTGTTTATAATC
CGTGATGTCATAAATCTAATAATGAAGAGATTTTCCATCTTAAATTCTAG
AATCATTATCGACAATGTTTGAAATATCCAACGAAATGTCCAAATCAAGG
ATGCGAAAAAGTATTTCCAAAGAATGCGGTATGTAAACCTAGGCTGTCAG
CACCCTATACTTGTTTTGTTATAAACGATGTGAATCGACCTCAAAAACCA
CGTCTGCTTAGCTTAGTTTTTTTTTTAGTTTTGAGTGGAAACCAAAGCTT
GATGTAATTTTTTTAGAAAATAGCTCGGAAAATAGGTCACAATTTTCTAA
ATTTTTCTTTCAGGTTTCTGGTCATCAAAACACAGAATGTCTTTTTCAGA
CAATTAAATGTGAATTTGAAAATTTTGGTTGCAATGTTCAGGTATTAACT
TTTTTATCTGGTAAATCCAAAGCACTGAGATACGTCATACGGGGACCGTC
GTGGACGTTATCATATATATTTCGCAGTGATGTAGAGATGGACTCTGTTA
ATCAAATTATAGACCCAAACAGACGAATTTTTTCTAAAGTAACTTTTACG
TACATATGAATTATCATTGTTTTGATCATCTTTTTTTTTCAGGTTCTTCG
AAAAGACT

Coding sequence (CDS) from alignment at sc0005421:13..4420-

>TCONS_00044345 ID=TCONS_00044345|Name=TCONS_00044345|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0005421:13..4420- (Clytia hemisphaerica)
GTTCTTCGAAAAGACGTTTCTGGTCATCAAAACACAGAATGTCTTTTTCA
GACAATTAAATGTGAATTTGAAAATTTTGGTTGCAATGTTCAGAATCATT
ATCGACAATGTTTGAAATATCCAACGAAATGTCCAAATCAAGGATGCGAA
AAAGTATTTCCAAAGAATGCGAACACGGATTGTCCATACGTCGAAATAAC
GTGCCGTTTTACGGGATGTGACGTATGCTTCTTACGTAAAGCGAAACAAC
AACACGAACAAAATTGTCCGATGAAAGAGGTGAACTGCGTGTACTGTCAA
ATGGCTTTTAAAGAAAGTGATGAACAGGTTCTTCGAAAAGACGTTTCTGG
TCATCAAAACACAGAATGTCTTTTTCAGACAATTAAATGTGAATTTGAAA
ATTTTGGTTGCAATGTTCAGAATCATTATCGACAATGTTTGAAATATCCA
ACGAAATGTCCAAATCAAGGATGCGAAAAAGTATTTCCAAAGAATGCGAA
CACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGTGACG
TATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGATG
AAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTGATGA
ACAGGTTCTTCGAAAAGACGTTTCTGGTCATCAAAACACAGAATGTCTTT
TTCAGACAATTAAATGTGAATTTGAAAATTTTGGTTGCAATGTTCAGAAT
CATTATCGACAATGTTTGAAATATCCAACGAAATGTCCAAATCAAGGATG
CGAAAAAGTATTTCCAAAGAATGCGAACACGGATTGTCCATACGTCGAAA
TAACGTGCCGTTTTACGGGATGTGACGTATGCTTCTTACGTAAAGCGAAA
CAACAACACGAACAAAATTGTCCGATGAAAGAGGTGAACTGCGTGTACTG
TCAAATGGCTTTTAAAGAAAGTGATGAACAGGTTCTTCGAAAAGACGTTT
CTGGTCATCAAAACACAGAATGTCTTTTTCAGACAATTAAATGTGAATTT
GAAAATTTTGGTTGCAATGTTCAGAATCATTATCGACAATGTTTGAAATA
TCCAACGAAATGTCCAAATCAAGGATGCGAAAAAGTATTTCCAAAGAATG
CGAACACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGT
GACGTATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCC
GATGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTG
ATGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027978XLOC_027978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044345-exon-sc0005421-1575043694:4265..4420TCONS_00044345-exon-sc0005421-1575043694:4265..4420Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1575043694:493..570TCONS_00044345-exon-sc0005421-1575043694:493..570Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1575043694:230..307TCONS_00044345-exon-sc0005421-1575043694:230..307Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1575043694:13..28TCONS_00044345-exon-sc0005421-1575043694:13..28Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:4265..4420TCONS_00044345-exon-sc0005421-1510915933:4265..4420Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:493..570TCONS_00044345-exon-sc0005421-1510915933:493..570Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:230..307TCONS_00044345-exon-sc0005421-1510915933:230..307Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:13..28TCONS_00044345-exon-sc0005421-1510915933:13..28Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:4265..4420TCONS_00044345-exon-sc0005421-1491911889:4265..4420Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:493..570TCONS_00044345-exon-sc0005421-1491911889:493..570Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:230..307TCONS_00044345-exon-sc0005421-1491911889:230..307Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:13..28TCONS_00044345-exon-sc0005421-1491911889:13..28Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044345-proteinTCONS_00044345-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005421supercontigsc0005421:13..4420 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.457733	0	0	0	0.352144	0	0	0	0.440712	0	0	3.25189	4.54903	0	0	0.521224	0.018979	2.39978	4.74816	0.0739421	0	0.782241	1.04821	0	0.444503	0	0	0.429165	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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