TCONS_00044343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044343
Unique NameTCONS_00044343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044343 ID=TCONS_00044343|Name=TCONS_00044343|organism=Clytia hemisphaerica|type=transcript|length=494bp
TAAAGTCAAGTGGAAACCAGGCTGAACTTGCCCTACGAAAGACAGCTGAC
CACTCAAAGGACAAGTACCCTCGCGTCAACGAAGTTGTCAACAAGGACGT
TTACGTCGACGACTGCATTTCAGGTGAAGATTCATTACAGGAAGCCATGG
AAACCGCCGACAGCCTAGAAATCGTCGTCAACAAAGGTGGGTTTCGACTC
AAAGGATTTACCTTCAGTGGCAGTGACCCACATGAAGCTCTCTCACATGA
TGGCAAGTCTATTTCTGTTGGGGAATGGTCTGGTACCCAAAGATCGACAA
ACTATCACTTGACATCTCCGAAATGAATTTTGCTCGaaagcaaaggggga
agaaacCGACAGAATCATCAGGTACAATTCCATCTCGACTCACAAGAAGA
CACTGCGTTTCCAAAGTATCTGAAATCTTCGACCCAACTGGAAAGATGAC
TCCAATCACTGCTGGTCTCAAACTCGATCTGCATGAACTAGTCA
Run BLAST on NCBI

protein sequence of TCONS_00044343-protein

>TCONS_00044343-protein ID=TCONS_00044343-protein|Name=TCONS_00044343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
KSSGNQAELALRKTADHSKDKYPRVNEVVNKDVYVDDCISGEDSLQEAME
TADSLEIVVNKGGFRLKGFTFSGSDPHEALSHDGKSISVGEWSGTQRSTN
YHLTSPK
Run BLAST on NCBI

transcript from alignment at sc0005412:4000..4493

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044343 ID=TCONS_00044343|Name=TCONS_00044343|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0005412:4000..4493 (Clytia hemisphaerica)
TGACTAGTTCATGCAGATCGAGTTTGAGACCAGCAGTGATTGGAGTCATC
TTTCCAGTTGGGTCGAAGATTTCAGATACTTTGGAAACGCAGTGTCTTCT
TGTGAGTCGAGATGGAATTGTACCTGATGATTCTGTCGgtttcttccccc
tttgctttCGAGCAAAATTCATTTCGGAGATGTCAAGTGATAGTTTGTCG
ATCTTTGGGTACCAGACCATTCCCCAACAGAAATAGACTTGCCATCATGT
GAGAGAGCTTCATGTGGGTCACTGCCACTGAAGGTAAATCCTTTGAGTCG
AAACCCACCTTTGTTGACGACGATTTCTAGGCTGTCGGCGGTTTCCATGG
CTTCCTGTAATGAATCTTCACCTGAAATGCAGTCGTCGACGTAAACGTCC
TTGTTGACAACTTCGTTGACGCGAGGGTACTTGTCCTTTGAGTGGTCAGC
TGTCTTTCGTAGGGCAAGTTCAGCCTGGTTTCCACTTGACTTTA

Coding sequence (CDS) from alignment at sc0005412:4000..4493

>TCONS_00044343 ID=TCONS_00044343|Name=TCONS_00044343|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0005412:4000..4493 (Clytia hemisphaerica)
TCATTTCGGAGATGTCAAGTGATAGTTTGTCGATCTTTGGGTACCAGACC
ATTCCCCAACAGAAATAGACTTGCCATCATGTGAGAGAGCTTCATGTGGG
TCACTGCCACTGAAGGTAAATCCTTTGAGTCGAAACCCACCTTTGTTGAC
GACGATTTCTAGGCTGTCGGCGGTTTCCATGGCTTCCTGTAATGAATCTT
CACCTGAAATGCAGTCGTCGACGTAAACGTCCTTGTTGACAACTTCGTTG
ACGCGAGGGTACTTGTCCTTTGAGTGGTCAGCTGTCTTTCGTAGGGCAAG
TTCAGCCTGGTTTCCACTTGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027976XLOC_027976Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044343-proteinTCONS_00044343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044343-exon-sc0005412-1491911889:4000..4493TCONS_00044343-exon-sc0005412-1491911889:4000..4493Clytia hemisphaericaexon
TCONS_00044343-exon-sc0005412-1510915933:4000..4493TCONS_00044343-exon-sc0005412-1510915933:4000..4493Clytia hemisphaericaexon
TCONS_00044343-exon-sc0005412-1575043694:4000..4493TCONS_00044343-exon-sc0005412-1575043694:4000..4493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005412supercontigsc0005412:4000..4493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08884	3.48418	1.14107	0.868205	0	0.397966	0.960258	1.64813	1.01865	1.09218	0	0.183448	1.1765	0.333613	0.212057	0.151713	0.467246	0.400821	1.81203	1.42316	0	0.176119	0.302627	0.851118	2.40574	3.13485	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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