TCONS_00044340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044340
Unique NameTCONS_00044340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044340 ID=TCONS_00044340|Name=TCONS_00044340|organism=Clytia hemisphaerica|type=transcript|length=252bp
CTTTAGTTGTTAGCTTAATATTGTTACTTTTTCATATTTAAACTTTAGGC
GGGAACATTCGAATGAGAAATGATGCAAATTATGAAGAACTCCTATTACC
GAAATGTTGCACTGCTGGATGAGAAATTACTTTTCATCAAATGGCAAAAT
TAAAGTAAAGTCAACAAGTCGCTTCCAATCAGCATTGGTAATGATGGCAC
GAACAAGCtgaaatcattttcaaagaaataaaaacttgattttaaaattt
cc
Run BLAST on NCBI

transcript from alignment at sc0005405:3128..3636+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044340 ID=TCONS_00044340|Name=TCONS_00044340|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0005405:3128..3636+ (Clytia hemisphaerica)
CTTTAGTTGTTAGCTTAATATTGTTACTTTTTCATATTTAAACTTTAGGC
GGGAACATTCGAATGAGAAATGATGCAAATTATGAAGAACTCCTATTACC
GAAATGTTGCACTGCTGGATGAGAAATTACTTTTCATCAAATGTAAGAAC
tttattattctaaattttacaTTGAGATAGATACACCAAATGTATTTGAC
TGAAAATGTTTTCCTTAATGGTAAAAATTGTCTTTCAGGGAATAAAGTTT
ATTTtgagctaaaatttgactttcatCTCTGGGATGGCTCAAAAGAATAC
TGTAcggattttttaaattctatttgTTTGAACAATGTTAAATACTGTTA
TGTATCCtgatataattttcaaattttttgttttattttctctttacagG
GCAAAATTAAAGTAAAGTCAACAAGTCGCTTCCAATCAGCATTGGTAATG
ATGGCACGAACAAGCtgaaatcattttcaaagaaataaaaacttgatttt
aaaatttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027973XLOC_027973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044340-exon-sc0005405-1491911889:3128..3269TCONS_00044340-exon-sc0005405-1491911889:3128..3269Clytia hemisphaericaexon
TCONS_00044340-exon-sc0005405-1510915933:3128..3269TCONS_00044340-exon-sc0005405-1510915933:3128..3269Clytia hemisphaericaexon
TCONS_00044340-exon-sc0005405-1575043694:3128..3269TCONS_00044340-exon-sc0005405-1575043694:3128..3269Clytia hemisphaericaexon
TCONS_00044340-exon-sc0005405-1491911889:3527..3636TCONS_00044340-exon-sc0005405-1491911889:3527..3636Clytia hemisphaericaexon
TCONS_00044340-exon-sc0005405-1510915933:3527..3636TCONS_00044340-exon-sc0005405-1510915933:3527..3636Clytia hemisphaericaexon
TCONS_00044340-exon-sc0005405-1575043694:3527..3636TCONS_00044340-exon-sc0005405-1575043694:3527..3636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005405supercontigsc0005405:3128..3636 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.71815	4.10132	2.68947	2.1353	0	0	0	2.79941	0	0	0	0	0	0	0	0.147076	0	0.442947	0	0	0	0.577967	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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