TCONS_00044333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044333
Unique NameTCONS_00044333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044333 ID=TCONS_00044333|Name=TCONS_00044333|organism=Clytia hemisphaerica|type=transcript|length=432bp
aTAATTTCATGTTGGAGTCTATAATCAGCCTAATGAGAATGAATTCTGAT
TTATTTCCTCCAATCTTTTTTTCCAGGGCAAAATCACTAATTGAAAAATA
TGGCGACCATCTTTCAATGTCATTATATGAGATCTTCAATATTTTATATT
CAAGAATTTATTCATCCAactaaaaaggaagaaaaatatttatattttaa
acagCAATTTAGCCATATTGACATGGACAAGAGAACCTTTTATACCTATT
TAGCaagatttcataaatttttggcaaaaaagaaatactccacttcaatg
aagaaaaaagtgatGAGTCACTTCACACTTGAGAAGTGGAATAATCCTGA
TGAGAATTACAAACATTTACATACACTTTTCAGTTGTGGTCCTTGTAAAC
ATATTAATCTACCAAACTCTTCAGAGAATTTG
Run BLAST on NCBI

protein sequence of TCONS_00044333-protein

>TCONS_00044333-protein ID=TCONS_00044333-protein|Name=TCONS_00044333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MATIFQCHYMRSSIFYIQEFIHPTKKEEKYLYFKQQFSHIDMDKRTFYTY
LARFHKFLAKKKYSTSMKKKVMSHFTLEKWNNPDENYKHLHTLFSCGPCK
HINLPNSSENL
Run BLAST on NCBI

transcript from alignment at sc0005389:583..1014

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044333 ID=TCONS_00044333|Name=TCONS_00044333|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0005389:583..1014 (Clytia hemisphaerica)
CAAATTCTCTGAAGAGTTTGGTAGATTAATATGTTTACAAGGACCACAAC
TGAAAAGTGTATGTAAATGTTTGTAATTCTCATCAGGATTATTCCACTTC
TCAAGTGTGAAGTGACTCatcacttttttcttcattgaagtggagtattt
cttttttgccaaaaatttatgaaatcttGCTAAATAGGTATAAAAGGTTC
TCTTGTCCATGTCAATATGGCTAAATTGctgtttaaaatataaatatttt
tcttcctttttagtTGGATGAATAAATTCTTGAATATAAAATATTGAAGA
TCTCATATAATGACATTGAAAGATGGTCGCCATATTTTTCAATTAGTGAT
TTTGCCCTGGAAAAAAAGATTGGAGGAAATAAATCAGAATTCATTCTCAT
TAGGCTGATTATAGACTCCAACATGAAATTAt

Coding sequence (CDS) from alignment at sc0005389:583..1014

>TCONS_00044333 ID=TCONS_00044333|Name=TCONS_00044333|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0005389:583..1014 (Clytia hemisphaerica)
CAAATTCTCTGAAGAGTTTGGTAGATTAATATGTTTACAAGGACCACAAC
TGAAAAGTGTATGTAAATGTTTGTAATTCTCATCAGGATTATTCCACTTC
TCAAGTGTGAAGTGACTCatcacttttttcttcattgaagtggagtattt
cttttttgccaaaaatttatgaaatcttGCTAAATAGGTATAAAAGGTTC
TCTTGTCCATGTCAATATGGCTAAATTGctgtttaaaatataaatatttt
tcttcctttttagtTGGATGAATAAATTCTTGAATATAAAATATTGAAGA
TCTCATATAATGACATTGAAAGATGGTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027966XLOC_027966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044333-exon-sc0005389-1491911889:583..1014TCONS_00044333-exon-sc0005389-1491911889:583..1014Clytia hemisphaericaexon
TCONS_00044333-exon-sc0005389-1510915933:583..1014TCONS_00044333-exon-sc0005389-1510915933:583..1014Clytia hemisphaericaexon
TCONS_00044333-exon-sc0005389-1575043694:583..1014TCONS_00044333-exon-sc0005389-1575043694:583..1014Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044333-proteinTCONS_00044333-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005389supercontigsc0005389:583..1014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.155141	0	0	0	0	0	0	0	0	0.322365	0.105955	0.105808	0	0.0903383	0.387787	0.119431	0.612062	1.35296	0.353943	1.38438	0.900337	0	0.16584	0	0	1.96333	1.62969	0.353162	0.359816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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