TCONS_00044328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044328
Unique NameTCONS_00044328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044328 ID=TCONS_00044328|Name=TCONS_00044328|organism=Clytia hemisphaerica|type=transcript|length=233bp
TAGGTAACAAAAATTCAGCTGAGTGTAAAGAGTTTTGGAAAGTAAGAAAG
AACTTATCATTACCTTTGTTCCATGGGAGGCCGAGCACTTTAGTGAGGTC
ACATTTGTCGAGGACTTGATTCTCTCctgtaaaaagttttttcagatttc
gtTCGAGCGATTCACAGTTCGATTGAGCTTTACGAAGATTGAAATTGGCT
TCAGCAAAATGTTCTTTACAGGACGTATAAAAT
Run BLAST on NCBI

transcript from alignment at sc0005380:4161..4393

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044328 ID=TCONS_00044328|Name=TCONS_00044328|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at sc0005380:4161..4393 (Clytia hemisphaerica)
ATTTTATACGTCCTGTAAAGAACATTTTGCTGAAGCCAATTTCAATCTTC
GTAAAGCTCAATCGAACTGTGAATCGCTCGAacgaaatctgaaaaaactt
tttacagGAGAGAATCAAGTCCTCGACAAATGTGACCTCACTAAAGTGCT
CGGCCTCCCATGGAACAAAGGTAATGATAAGTTCTTTCTTACTTTCCAAA
ACTCTTTACACTCAGCTGAATTTTTGTTACCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027961XLOC_027961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044328-exon-sc0005380-1491911889:4161..4393TCONS_00044328-exon-sc0005380-1491911889:4161..4393Clytia hemisphaericaexon
TCONS_00044328-exon-sc0005380-1510915933:4161..4393TCONS_00044328-exon-sc0005380-1510915933:4161..4393Clytia hemisphaericaexon
TCONS_00044328-exon-sc0005380-1575043694:4161..4393TCONS_00044328-exon-sc0005380-1575043694:4161..4393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005380supercontigsc0005380:4161..4393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314611	0	0	0	0.54046	0	0	0	0.848301	2.6475	0	0.830571	0.766606	1.0995	3.45328	2.51231	0	2.31138	0	1.44882	0.227586	1.30232	0.165628	0.125447	0	0.964603	0.0216477	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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