TCONS_00044324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044324
Unique NameTCONS_00044324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044324 ID=TCONS_00044324|Name=TCONS_00044324|organism=Clytia hemisphaerica|type=transcript|length=534bp
TTTATGATCATTATAAGTATATACAGTGtgttcaaaaatatataaaaatc
acTAATAAATCTCCATCTAAATAGTACACTAAATAACACTACAATAAATA
TATCTCATAAATCATACCGTGACCCCACCTCAAGTCCAATTCCCATAAAA
AGTTTGATGGATTGAAAATCACTTAAAAGTgtaaacagtgaaaaaacttA
CACAAAGAATCTTCAATATCTAATGAAAATTTCCGACCTAATTTAATCAA
GTttactttcaaatatttcttatgTACGCCTTTTTATGTATTAAGGCATG
AACAATCCTTACCTCGAAATTCACTTTATTTAAAAAGCAACACTTGAAGT
CTCAAGGTATAGAATCGCCATAGTTTCAAAACGAGGgagtcgttgcactc
aaaataattcatGAAATGTCTGTTATCTTTAATTGTCTATCGGTTAACCC
GTTGCCATCACTAATATCACTACTGTATTTAAAGCTAgtatcttaaaggt
tttgtttttatatgagcgttcccgttttatatca
Run BLAST on NCBI

transcript from alignment at sc0005374:6..539

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044324 ID=TCONS_00044324|Name=TCONS_00044324|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at sc0005374:6..539 (Clytia hemisphaerica)
tgatataaaacgggaacgctcatataaaaacaaaacctttaagatacTAG
CTTTAAATACAGTAGTGATATTAGTGATGGCAACGGGTTAACCGATAGAC
AATTAAAGATAACAGACATTTCatgaattattttgagtgcaacgactcCC
TCGTTTTGAAACTATGGCGATTCTATACCTTGAGACTTCAAGTGTTGCTT
TTTAAATAAAGTGAATTTCGAGGTAAGGATTGTTCATGCCTTAATACATA
AAAAGGCGTAcataagaaatatttgaaagtaaACTTGATTAAATTAGGTC
GGAAATTTTCATTAGATATTGAAGATTCTTTGTGTaagttttttcactgt
ttacACTTTTAAGTGATTTTCAATCCATCAAACTTTTTATGGGAATTGGA
CTTGAGGTGGGGTCACGGTATGATTTATGAGATATATTTATTGTAGTGTT
ATTTAGTGTACTATTTAGATGGAGATTTATTAgtgatttttatatatttt
tgaacaCACTGTATATACTTATAATGATCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027957XLOC_027957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044324-exon-sc0005374-1491911889:6..539TCONS_00044324-exon-sc0005374-1491911889:6..539Clytia hemisphaericaexon
TCONS_00044324-exon-sc0005374-1510915933:6..539TCONS_00044324-exon-sc0005374-1510915933:6..539Clytia hemisphaericaexon
TCONS_00044324-exon-sc0005374-1575043694:6..539TCONS_00044324-exon-sc0005374-1575043694:6..539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005374supercontigsc0005374:6..539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.436448	0.558216	0	0	0.188618	0	0.363143	0.322064	0.196432	0.568271	0.157819	1.05516	0.342704	0.334273	0.104463	0.21553	0.124923	0.242185	0	0	1.26651	1.26906	1.80079	0	0	0.467345	0	0	0.417193	1.34763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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