TCONS_00044313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044313
Unique NameTCONS_00044313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044313 ID=TCONS_00044313|Name=TCONS_00044313|organism=Clytia hemisphaerica|type=transcript|length=793bp
NNCCACCGCCAGACAGCCCATGCAGTAATGTCAACCGAGTAAACCTAAAA
GCGTATTTATCAAATCACATCATGGTAGCTGCTTTTTTGCCGCTGTGAAA
GATGTAACACTGGCGAACTGAAGAATGAATTTATCAGATGAGATTTAACG
TAACATCAACCAATTTATTTATGGAATAAACTTCATTTTCGTTAAATTGA
GTTATAAAAAACTCTGAGAGATTACTGTGTTTTTTAGCTCTGGTATTTCT
GGTTGCTAAAATTAACATTGCTTAGTTTGGTGTTAAcgtacatgtttaaa
attttagaatGACATTTTTGTTCTGCAAACAGTTGTACATGGGTCGTAGT
GTTTATACATTTGGCAGCCAAAGACACTGAAAGGATTTTTGCAATAACTT
GGCCAttgtttatatattatattgtggacatcaaatgataagatttacga
gaaaaggaaaatattatgatgatgatggacACCTGTCAATGTTTACTTTG
CAGATCAAATTtatgaaaacataaaacaaaaacatgaaaactataatgaa
aacatgaaaactaTAATGCTGCTAATTCATGAAAATGTTTAATTAACCAG
GAAAAATCACTGTGACATTTTAGTGAATTCatggtgaaaagctgcaatca
tTCAATAATTCACTCAAAAAAGCTGTGAATTGTTGAAAGGTTGCAACTTT
TCACCTAGTTTCAAtgtgaattcactaaaaagtcacaaggaatttttctg
aattttttcctgtgtaccgtcaacggctctaacttgggacgNN
Run BLAST on NCBI

transcript from alignment at sc0005346:2910..3702

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044313 ID=TCONS_00044313|Name=TCONS_00044313|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0005346:2910..3702 (Clytia hemisphaerica)
NNcgtcccaagttagagccgttgacggtacacaggaaaaaattcagaaaa
attccttgtgactttttagtgaattcacaTTGAAACTAGGTGAAAAGTTG
CAACCTTTCAACAATTCACAGCTTTTTTGAGTGAATTATTGAatgattgc
agcttttcaccatGAATTCACTAAAATGTCACAGTGATTTTTCCTGGTTA
ATTAAACATTTTCATGAATTAGCAGCATTAtagttttcatgttttcatta
tagttttcatgtttttgttttatgttttcataAATTTGATCTGCAAAGTA
AACATTGACAGGTgtccatcatcatcataatattttccttttctcgtaaa
tcttatcatttgatgtccacaatataatatataaacaaTGGCCAAGTTAT
TGCAAAAATCCTTTCAGTGTCTTTGGCTGCCAAATGTATAAACACTACGA
CCCATGTACAACTGTTTGCAGAACAAAAATGTCattctaaaattttaaac
atgtacgTTAACACCAAACTAAGCAATGTTAATTTTAGCAACCAGAAATA
CCAGAGCTAAAAAACACAGTAATCTCTCAGAGTTTTTTATAACTCAATTT
AACGAAAATGAAGTTTATTCCATAAATAAATTGGTTGATGTTACGTTAAA
TCTCATCTGATAAATTCATTCTTCAGTTCGCCAGTGTTACATCTTTCACA
GCGGCAAAAAAGCAGCTACCATGATGTGATTTGATAAATACGCTTTTAGG
TTTACTCGGTTGACATTACTGCATGGGCTGTCTGGCGGTGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027946XLOC_027946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044313-exon-sc0005346-1491911889:2910..3702TCONS_00044313-exon-sc0005346-1491911889:2910..3702Clytia hemisphaericaexon
TCONS_00044313-exon-sc0005346-1510915933:2910..3702TCONS_00044313-exon-sc0005346-1510915933:2910..3702Clytia hemisphaericaexon
TCONS_00044313-exon-sc0005346-1575043694:2910..3702TCONS_00044313-exon-sc0005346-1575043694:2910..3702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005346supercontigsc0005346:2910..3702 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66808	2.59484	0.920747	0.856059	13.0541	6.26489	9.43936	12.8304	7.79246	8.56545	6.06245	6.4122	2.98518	2.03656	1.81789	2.27191	1.91327	2.42062	2.00033	3.63607	7.67435	7.1714	4.312	5.79067	1.26023	3.40585	17.6816	10.4818	5.39232	7.15084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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