|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044311 ID=TCONS_00044311|Name=TCONS_00044311|organism=Clytia hemisphaerica|type=transcript|length=1483bp
NNAAACctcgaaaattgatttttaaacaaaagaagacAAGAAAACCAGTC
CCTACTATGATTAATAAtaccttaaaataaaaataaattctattgttttt
ggaaaataagaaataattGTCACTTTAACGAGTCACTTTTAAAATCGCCT
CGGAAAGGGTTGAATATTTGCACCAGGTGGTACTACACGTGTGAATTCCA
AGCGTCCATCCCTCAATTGAATGGAGGGTGGTACTTGTATTGTAACAGCT
TGAGATCCAGCAGGTGGGAAACCTTGCTGAATGGTGACACCTGGTGGTGG
TACACGGGTCAAACCTCGGAAAGCATCGGCAGGTGGTGGGTTGACGTGAG
GTGCAGCTTGTACGATACCGGGTAATGGTCGTGAAGCCATCTCAGCTGCA
AGTGGATGAAGACCACGCCTTTCAGTCATGGAGACAGGCTCGGGACGTCC
AGCTCTTGGGCCGCTTGAATTTTGACGATTGATACCTCGGTCGATTGGTT
TGGAATCGTGGCGATAACCTTCTCTTCGTTCTTCACGAGGTCTGTCATCA
CGGCGATGCTCACGAGATGGTTCGTAACGGGCATTCGAGGCTGCTAGTTT
ACCCCGATCGACGTACGATTCTTTACGTTCTGTCGCGTAAGAGTCTTTAC
GATGTCCAGTTGGTGCGTAAGGGTCTTTACGATCAGCGGTGTAGGGATCT
TTACGATCAAAACTTTCACGCCTTTGATAAGGTTCTTTTCTACCGTCAGG
ATGATACGAATCTTTTCTTTCCGGTTCTCTTCGAGCATCACGTCGCTCTT
CGTAACGCTCTCGTCTCTCGTCCCCTCTTGGGTCGCGACGCTCACCCTCG
CGATAATTAGCACCATCTCTCGATTCACGGCGTTCTGAGGGATGCGCACC
ATGGCGATCATCTGGTCGACGGTTGTCTAGTTTGTACGGATTACCGTCTC
GTTGCGGTTCTCTATGGCTTTCACGCTGTGGTAATGGTTCACGGCGGATC
TCACGTGTTGGCTCTCTATGGTGGCTGTCTCTAGCTGCTTCTCTGTGGTA
TCCGTCTCTATCCTTGTCTTCACCTCTGGCGTCATCGTAACCACGGTGCT
CTTCGCGTCCGTAACCTGCTCCACCTCGAGGTTCATTTTCAGCTTGAGAC
CCAAGGATTCCAGTCAAGCCTGCACGTCCGAGAACATCGGATAACGTTTT
AGGAGCGTTTGGATTTGGAGCATTTAACCAGGGTTTTCCTCTTTCTCTCT
CGTATTCTGATGGGCGGTCATTATATCGGGGATCGCTTTTCCCCTCGTAT
TGGGGACGGTGCGGAGAGCGCTCGCGGGTTTGCGGATAACGGTCAACAAC
ACGTCGAATATCGGCACCTTCTTTAGGAGCTGGTTCGTATCTTCGAGAAT
CACGTCTACGAACTTCATTTTCGCGTTGATAAGGTCGTTCATTGCGAGAG
TCTACTACAGTTCTACGATAGGCCATGTCGTAA Run BLAST on NCBI protein sequence of TCONS_00044311-protein >TCONS_00044311-protein ID=TCONS_00044311-protein|Name=TCONS_00044311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
YDMAYRRTVVDSRNERPYQRENEVRRRDSRRYEPAPKEGADIRRVVDRYP
QTRERSPHRPQYEGKSDPRYNDRPSEYERERGKPWLNAPNPNAPKTLSDV
LGRAGLTGILGSQAENEPRGGAGYGREEHRGYDDARGEDKDRDGYHREAA
RDSHHREPTREIRREPLPQRESHREPQRDGNPYKLDNRRPDDRHGAHPSE
RRESRDGANYREGERRDPRGDERRERYEERRDARREPERKDSYHPDGRKE
PYQRRESFDRKDPYTADRKDPYAPTGHRKDSYATERKESYVDRGKLAASN
ARYEPSREHRRDDRPREERREGYRHDSKPIDRGINRQNSSGPRAGRPEPV
SMTERRGLHPLAAEMASRPLPGIVQAAPHVNPPPADAFRGLTRVPPPGVT
IQQGFPPAGSQAVTIQVPPSIQLRDGRLEFTRVVPPGANIQPFPRRF Run BLAST on NCBI transcript from alignment at sc0005345:1..1483 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044311 ID=TCONS_00044311|Name=TCONS_00044311|organism=Clytia hemisphaerica|type=transcript|length=1483bp|location=Sequence derived from alignment at sc0005345:1..1483 (Clytia hemisphaerica)
TTACGACATGGCCTATCGTAGAACTGTAGTAGACTCTCGCAATGAACGAC
CTTATCAACGCGAAAATGAAGTTCGTAGACGTGATTCTCGAAGATACGAA
CCAGCTCCTAAAGAAGGTGCCGATATTCGACGTGTTGTTGACCGTTATCC
GCAAACCCGCGAGCGCTCTCCGCACCGTCCCCAATACGAGGGGAAAAGCG
ATCCCCGATATAATGACCGCCCATCAGAATACGAGAGAGAAAGAGGAAAA
CCCTGGTTAAATGCTCCAAATCCAAACGCTCCTAAAACGTTATCCGATGT
TCTCGGACGTGCAGGCTTGACTGGAATCCTTGGGTCTCAAGCTGAAAATG
AACCTCGAGGTGGAGCAGGTTACGGACGCGAAGAGCACCGTGGTTACGAT
GACGCCAGAGGTGAAGACAAGGATAGAGACGGATACCACAGAGAAGCAGC
TAGAGACAGCCACCATAGAGAGCCAACACGTGAGATCCGCCGTGAACCAT
TACCACAGCGTGAAAGCCATAGAGAACCGCAACGAGACGGTAATCCGTAC
AAACTAGACAACCGTCGACCAGATGATCGCCATGGTGCGCATCCCTCAGA
ACGCCGTGAATCGAGAGATGGTGCTAATTATCGCGAGGGTGAGCGTCGCG
ACCCAAGAGGGGACGAGAGACGAGAGCGTTACGAAGAGCGACGTGATGCT
CGAAGAGAACCGGAAAGAAAAGATTCGTATCATCCTGACGGTAGAAAAGA
ACCTTATCAAAGGCGTGAAAGTTTTGATCGTAAAGATCCCTACACCGCTG
ATCGTAAAGACCCTTACGCACCAACTGGACATCGTAAAGACTCTTACGCG
ACAGAACGTAAAGAATCGTACGTCGATCGGGGTAAACTAGCAGCCTCGAA
TGCCCGTTACGAACCATCTCGTGAGCATCGCCGTGATGACAGACCTCGTG
AAGAACGAAGAGAAGGTTATCGCCACGATTCCAAACCAATCGACCGAGGT
ATCAATCGTCAAAATTCAAGCGGCCCAAGAGCTGGACGTCCCGAGCCTGT
CTCCATGACTGAAAGGCGTGGTCTTCATCCACTTGCAGCTGAGATGGCTT
CACGACCATTACCCGGTATCGTACAAGCTGCACCTCACGTCAACCCACCA
CCTGCCGATGCTTTCCGAGGTTTGACCCGTGTACCACCACCAGGTGTCAC
CATTCAGCAAGGTTTCCCACCTGCTGGATCTCAAGCTGTTACAATACAAG
TACCACCCTCCATTCAATTGAGGGATGGACGCTTGGAATTCACACGTGTA
GTACCACCTGGTGCAAATATTCAACCCTTTCCGAGGCGATTTTAAAAGTG
ACTCGTTAAAGTGACaattatttcttattttccaaaaacaatagaattta
tttttattttaaggtaTTATTAATCATAGTAGGGACTGGTTTTCTTgtct
tcttttgtttaaaaatcaattttcgagGTTTNN Coding sequence (CDS) from alignment at sc0005345:1..1483 >TCONS_00044311 ID=TCONS_00044311|Name=TCONS_00044311|organism=Clytia hemisphaerica|type=CDS|length=1344bp|location=Sequence derived from alignment at sc0005345:1..1483 (Clytia hemisphaerica)
TACGACATGGCCTATCGTAGAACTGTAGTAGACTCTCGCAATGAACGACC
TTATCAACGCGAAAATGAAGTTCGTAGACGTGATTCTCGAAGATACGAAC
CAGCTCCTAAAGAAGGTGCCGATATTCGACGTGTTGTTGACCGTTATCCG
CAAACCCGCGAGCGCTCTCCGCACCGTCCCCAATACGAGGGGAAAAGCGA
TCCCCGATATAATGACCGCCCATCAGAATACGAGAGAGAAAGAGGAAAAC
CCTGGTTAAATGCTCCAAATCCAAACGCTCCTAAAACGTTATCCGATGTT
CTCGGACGTGCAGGCTTGACTGGAATCCTTGGGTCTCAAGCTGAAAATGA
ACCTCGAGGTGGAGCAGGTTACGGACGCGAAGAGCACCGTGGTTACGATG
ACGCCAGAGGTGAAGACAAGGATAGAGACGGATACCACAGAGAAGCAGCT
AGAGACAGCCACCATAGAGAGCCAACACGTGAGATCCGCCGTGAACCATT
ACCACAGCGTGAAAGCCATAGAGAACCGCAACGAGACGGTAATCCGTACA
AACTAGACAACCGTCGACCAGATGATCGCCATGGTGCGCATCCCTCAGAA
CGCCGTGAATCGAGAGATGGTGCTAATTATCGCGAGGGTGAGCGTCGCGA
CCCAAGAGGGGACGAGAGACGAGAGCGTTACGAAGAGCGACGTGATGCTC
GAAGAGAACCGGAAAGAAAAGATTCGTATCATCCTGACGGTAGAAAAGAA
CCTTATCAAAGGCGTGAAAGTTTTGATCGTAAAGATCCCTACACCGCTGA
TCGTAAAGACCCTTACGCACCAACTGGACATCGTAAAGACTCTTACGCGA
CAGAACGTAAAGAATCGTACGTCGATCGGGGTAAACTAGCAGCCTCGAAT
GCCCGTTACGAACCATCTCGTGAGCATCGCCGTGATGACAGACCTCGTGA
AGAACGAAGAGAAGGTTATCGCCACGATTCCAAACCAATCGACCGAGGTA
TCAATCGTCAAAATTCAAGCGGCCCAAGAGCTGGACGTCCCGAGCCTGTC
TCCATGACTGAAAGGCGTGGTCTTCATCCACTTGCAGCTGAGATGGCTTC
ACGACCATTACCCGGTATCGTACAAGCTGCACCTCACGTCAACCCACCAC
CTGCCGATGCTTTCCGAGGTTTGACCCGTGTACCACCACCAGGTGTCACC
ATTCAGCAAGGTTTCCCACCTGCTGGATCTCAAGCTGTTACAATACAAGT
ACCACCCTCCATTCAATTGAGGGATGGACGCTTGGAATTCACACGTGTAG
TACCACCTGGTGCAAATATTCAACCCTTTCCGAGGCGATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044311-exon-sc0005345-1491911889:1..1483 | TCONS_00044311-exon-sc0005345-1491911889:1..1483 | Clytia hemisphaerica | exon |
| TCONS_00044311-exon-sc0005345-1510915933:1..1483 | TCONS_00044311-exon-sc0005345-1510915933:1..1483 | Clytia hemisphaerica | exon |
| TCONS_00044311-exon-sc0005345-1575043694:1..1483 | TCONS_00044311-exon-sc0005345-1575043694:1..1483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005345 | supercontig | sc0005345:1..1483 . |
Blast
The following BLAST results are available for this feature:
|
