TCONS_00044305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044305
Unique NameTCONS_00044305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044305 ID=TCONS_00044305|Name=TCONS_00044305|organism=Clytia hemisphaerica|type=transcript|length=356bp
CAGCGGCTTCAATACTTTTGATACTCCAGCAGTCTCCACTGATGGGGGTA
CTGCTCTATTTATTTCTAAATCTCTTAAAGGCAAACCTCGTGAggatctt
caaaattttattaattttaacaGCAGCAATCTTGAATCCACCTTTGCTga
gatttttttgaagaatcGAAAAAACTTCATCGTTGGTTGTATCTACAAAC
ATCCTCTTCTCGATGTTGatctttttattaaaatttatcTCCTTTGTTGA
AGAAAGCCTgccaagaaaataaaaatcttatcTTATTAGGTGATTTCAAC
ATCGATCTTTTAACTTGTGACATTGACCTTTCTCACTCTGCGTTTCTCGA
CAGTCT
Run BLAST on NCBI

transcript from alignment at sc0005337:1499..1854

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044305 ID=TCONS_00044305|Name=TCONS_00044305|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0005337:1499..1854 (Clytia hemisphaerica)
AGACTGTCGAGAAACGCAGAGTGAGAAAGGTCAATGTCACAAGTTAAAAG
ATCGATGTTGAAATCACCTAATAAgataagatttttattttcttggcAGG
CTTTCTTCAACAAAGGAgataaattttaataaaaagatCAACATCGAGAA
GAGGATGTTTGTAGATACAACCAACGATGAAGTTTTTTCgattcttcaaa
aaaatctcAGCAAAGGTGGATTCAAGATTGCTGCtgttaaaattaataaa
attttgaagatccTCACGAGGTTTGCCTTTAAGAGATTTAGAAATAAATA
GAGCAGTACCCCCATCAGTGGAGACTGCTGGAGTATCAAAAGTATTGAAG
CCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027939XLOC_027939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044305-exon-sc0005337-1491911889:1499..1854TCONS_00044305-exon-sc0005337-1491911889:1499..1854Clytia hemisphaericaexon
TCONS_00044305-exon-sc0005337-1510915933:1499..1854TCONS_00044305-exon-sc0005337-1510915933:1499..1854Clytia hemisphaericaexon
TCONS_00044305-exon-sc0005337-1575043694:1499..1854TCONS_00044305-exon-sc0005337-1575043694:1499..1854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005337supercontigsc0005337:1499..1854 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.724035	0.470699	0.273263	1.06938	1.30187	0.771566	0.310287	0.580974	0.203377	0.50383	1.22257	1.60734	0.481533	1.00015	0.548175	0.294138	0	0.1857	2.309	0.805399	0.233346	0.341454	0.276721	0.25158	1.29561	0.693779	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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